miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 37370 0.66 0.978925
Target:  5'- gGCGCCGUAaaaugCGUCUGcGGCCcag-CGu -3'
miRNA:   3'- -CGCGGCGUa----GCAGGCuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 46636 0.66 0.968312
Target:  5'- aGCGCCGCGcaaaagCCGcAGGCCgacgUCGa -3'
miRNA:   3'- -CGCGGCGUagca--GGC-UUCGGaua-AGC- -5'
24549 3' -53.6 NC_005264.1 + 58206 0.66 0.965153
Target:  5'- gGCGCCGCAcgaCGgccuguccgCCGggGCCg----- -3'
miRNA:   3'- -CGCGGCGUa--GCa--------GGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 63424 0.66 0.965153
Target:  5'- aGgGCCuCAUCGaaaCCGggGCCgaccugaGUUCGg -3'
miRNA:   3'- -CgCGGcGUAGCa--GGCuuCGGa------UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 136911 0.66 0.968312
Target:  5'- -aGCCGCGUCGUgCaGugcAGCCgcUUCGu -3'
miRNA:   3'- cgCGGCGUAGCAgG-Cu--UCGGauAAGC- -5'
24549 3' -53.6 NC_005264.1 + 64493 0.66 0.968312
Target:  5'- cGCGCCGagagaGUCGcCUGGAccGCgCUGUUCu -3'
miRNA:   3'- -CGCGGCg----UAGCaGGCUU--CG-GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 154468 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 32831 0.66 0.969517
Target:  5'- gGCGCCGUuccgGUCUGuAGCCUaaacaccacgaucauGUUCGa -3'
miRNA:   3'- -CGCGGCGuag-CAGGCuUCGGA---------------UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 60280 0.66 0.97401
Target:  5'- aGCGCCGCGUCGggcaUGAcGUacucggAUUCGg -3'
miRNA:   3'- -CGCGGCGUAGCag--GCUuCGga----UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 37848 0.66 0.968312
Target:  5'- gGCGCCGaugcCGgcaaCCGAAGCCU--UCa -3'
miRNA:   3'- -CGCGGCgua-GCa---GGCUUCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 127585 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 98842 0.66 0.971262
Target:  5'- aGCGCCGaCAccguUCGUCUGAcGuCCgggUCGa -3'
miRNA:   3'- -CGCGGC-GU----AGCAGGCUuC-GGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 98753 0.66 0.978925
Target:  5'- gGCGCCGUucAUCuUgCGgcGCaCUGUUCGc -3'
miRNA:   3'- -CGCGGCG--UAGcAgGCuuCG-GAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 100348 0.66 0.978925
Target:  5'- cGCGCCuGgAUCGUCCGAugaaAGUCa----- -3'
miRNA:   3'- -CGCGG-CgUAGCAGGCU----UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 95625 0.66 0.978925
Target:  5'- uGCGCCGCAUC-UCCGGgcaaccgcagAGCaaacugCGg -3'
miRNA:   3'- -CGCGGCGUAGcAGGCU----------UCGgauaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 65298 0.66 0.976562
Target:  5'- gGCGUCGCGUUcaCCGgAGGCCggcacgacccggUGUUCGu -3'
miRNA:   3'- -CGCGGCGUAGcaGGC-UUCGG------------AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 81200 0.66 0.976315
Target:  5'- gGCGCCGC-UgGUUCGAccaccaaggcggaGGCCacgUCGg -3'
miRNA:   3'- -CGCGGCGuAgCAGGCU-------------UCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 133612 0.66 0.976315
Target:  5'- cCGCCGCAUCGgagGAGGUcaugucaCUGUUCa -3'
miRNA:   3'- cGCGGCGUAGCaggCUUCG-------GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 154638 0.66 0.97401
Target:  5'- cGCGgCGCGUUGaagcugCCGGAGCUguuguugUCGa -3'
miRNA:   3'- -CGCgGCGUAGCa-----GGCUUCGGaua----AGC- -5'
24549 3' -53.6 NC_005264.1 + 86084 0.66 0.97401
Target:  5'- aGCGCCuGCGUUa--CGAGGCCU-UUCa -3'
miRNA:   3'- -CGCGG-CGUAGcagGCUUCGGAuAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.