miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 81200 0.66 0.976315
Target:  5'- gGCGCCGC-UgGUUCGAccaccaaggcggaGGCCacgUCGg -3'
miRNA:   3'- -CGCGGCGuAgCAGGCU-------------UCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 65298 0.66 0.976562
Target:  5'- gGCGUCGCGUUcaCCGgAGGCCggcacgacccggUGUUCGu -3'
miRNA:   3'- -CGCGGCGUAGcaGGC-UUCGG------------AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 95625 0.66 0.978925
Target:  5'- uGCGCCGCAUC-UCCGGgcaaccgcagAGCaaacugCGg -3'
miRNA:   3'- -CGCGGCGUAGcAGGCU----------UCGgauaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 100348 0.66 0.978925
Target:  5'- cGCGCCuGgAUCGUCCGAugaaAGUCa----- -3'
miRNA:   3'- -CGCGG-CgUAGCAGGCU----UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 98753 0.66 0.978925
Target:  5'- gGCGCCGUucAUCuUgCGgcGCaCUGUUCGc -3'
miRNA:   3'- -CGCGGCG--UAGcAgGCuuCG-GAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 98842 0.66 0.971262
Target:  5'- aGCGCCGaCAccguUCGUCUGAcGuCCgggUCGa -3'
miRNA:   3'- -CGCGGC-GU----AGCAGGCUuC-GGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 127585 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 37848 0.66 0.968312
Target:  5'- gGCGCCGaugcCGgcaaCCGAAGCCU--UCa -3'
miRNA:   3'- -CGCGGCgua-GCa---GGCUUCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 46636 0.66 0.968312
Target:  5'- aGCGCCGCGcaaaagCCGcAGGCCgacgUCGa -3'
miRNA:   3'- -CGCGGCGUagca--GGC-UUCGGaua-AGC- -5'
24549 3' -53.6 NC_005264.1 + 18354 0.67 0.958184
Target:  5'- uGCGCCgaGCGUCaG-CCGAcaAGCCUGUcUCu -3'
miRNA:   3'- -CGCGG--CGUAG-CaGGCU--UCGGAUA-AGc -5'
24549 3' -53.6 NC_005264.1 + 22236 0.67 0.958184
Target:  5'- gGCGCUaccguccaagGCGUCgGUCUGAAGCCgaacgcUCGc -3'
miRNA:   3'- -CGCGG----------CGUAG-CAGGCUUCGGaua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 6412 0.67 0.954365
Target:  5'- cCGCCGCAgaaccCGucUCCGuAGGCCcGUUCa -3'
miRNA:   3'- cGCGGCGUa----GC--AGGC-UUCGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 36698 0.67 0.954365
Target:  5'- uGCGcCCGCcUCGUC-GAGGCCgcgcgcUUCGc -3'
miRNA:   3'- -CGC-GGCGuAGCAGgCUUCGGau----AAGC- -5'
24549 3' -53.6 NC_005264.1 + 133225 0.67 0.961779
Target:  5'- cGCGCCGUAgagCuUUCGAAGCCa----- -3'
miRNA:   3'- -CGCGGCGUa--GcAGGCUUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 23956 0.67 0.946036
Target:  5'- gGCGCCGguUCcuugCUGucGCCUAUUaCGa -3'
miRNA:   3'- -CGCGGCguAGca--GGCuuCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 17196 0.67 0.950317
Target:  5'- uCGCCGCcuuugcCGUCCcuGAGUCUGUUUGg -3'
miRNA:   3'- cGCGGCGua----GCAGGc-UUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 76498 0.67 0.950317
Target:  5'- gGCGUcuCGCAUCGUUCGcGGCCa----- -3'
miRNA:   3'- -CGCG--GCGUAGCAGGCuUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 131997 0.68 0.92106
Target:  5'- cGCGCCGC--CG-CCGAcgacgacgcgAGCCcGUUCGa -3'
miRNA:   3'- -CGCGGCGuaGCaGGCU----------UCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 46511 0.68 0.941519
Target:  5'- cGCGCCGUAUUG-CCaauGGCCcaUGUUCu -3'
miRNA:   3'- -CGCGGCGUAGCaGGcu-UCGG--AUAAGc -5'
24549 3' -53.6 NC_005264.1 + 142181 0.68 0.926536
Target:  5'- aUGCCGUAUUccacaGUCUGGAGCCUGc--- -3'
miRNA:   3'- cGCGGCGUAG-----CAGGCUUCGGAUaagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.