Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24549 | 3' | -53.6 | NC_005264.1 | + | 5157 | 1.12 | 0.003487 |
Target: 5'- cGCGCCGCAUCGUCCGAAGCCUAUUCGg -3' miRNA: 3'- -CGCGGCGUAGCAGGCUUCGGAUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 66609 | 0.77 | 0.485617 |
Target: 5'- uGCGCCGCGUUG-CCGgcGCCg--UCGc -3' miRNA: 3'- -CGCGGCGUAGCaGGCuuCGGauaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 123463 | 0.75 | 0.635979 |
Target: 5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3' miRNA: 3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 124182 | 0.75 | 0.625709 |
Target: 5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3' miRNA: 3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 157871 | 0.75 | 0.625709 |
Target: 5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3' miRNA: 3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 158590 | 0.75 | 0.635979 |
Target: 5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3' miRNA: 3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 17098 | 0.74 | 0.656502 |
Target: 5'- cCGCCGcCAUCGUCCGcGGCCga--CGg -3' miRNA: 3'- cGCGGC-GUAGCAGGCuUCGGauaaGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 21345 | 0.73 | 0.737102 |
Target: 5'- uGCGCUGCcguUCGUCCcGGGCCgccUCGg -3' miRNA: 3'- -CGCGGCGu--AGCAGGcUUCGGauaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 56077 | 0.72 | 0.77549 |
Target: 5'- gGCgGCCGCAggaUCUGAGGCCUGUUgCGc -3' miRNA: 3'- -CG-CGGCGUagcAGGCUUCGGAUAA-GC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 67224 | 0.71 | 0.811815 |
Target: 5'- cCGCCGCuuaCGUCgGggGCCUGcgCa -3' miRNA: 3'- cGCGGCGua-GCAGgCuuCGGAUaaGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 62031 | 0.7 | 0.876107 |
Target: 5'- cGCGCUcuaGCAagGUUCGGAGCCUGcugCGc -3' miRNA: 3'- -CGCGG---CGUagCAGGCUUCGGAUaa-GC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 77970 | 0.7 | 0.861229 |
Target: 5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3' miRNA: 3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 12841 | 0.7 | 0.868775 |
Target: 5'- aGC-CCGCAUUGUucuucCCGAGGCCUuccgUUGg -3' miRNA: 3'- -CGcGGCGUAGCA-----GGCUUCGGAua--AGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 26029 | 0.7 | 0.861229 |
Target: 5'- aGCGagaCGCuucaugCGUCC--AGCCUGUUCGg -3' miRNA: 3'- -CGCg--GCGua----GCAGGcuUCGGAUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 160256 | 0.7 | 0.876107 |
Target: 5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3' miRNA: 3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 105082 | 0.7 | 0.853474 |
Target: 5'- gGCGCCuguUCGgcCUGAGGCCUGUUCc -3' miRNA: 3'- -CGCGGcguAGCa-GGCUUCGGAUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 67485 | 0.7 | 0.861229 |
Target: 5'- gGCGCCGCcgCGauacccUUCGAAGCCgacgCGc -3' miRNA: 3'- -CGCGGCGuaGC------AGGCUUCGGauaaGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 121796 | 0.7 | 0.876107 |
Target: 5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3' miRNA: 3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 26692 | 0.69 | 0.903197 |
Target: 5'- cCGCCGCggCGUa-GAAGCUgGUUCGg -3' miRNA: 3'- cGCGGCGuaGCAggCUUCGGaUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 160593 | 0.69 | 0.909389 |
Target: 5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3' miRNA: 3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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