miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 5157 1.12 0.003487
Target:  5'- cGCGCCGCAUCGUCCGAAGCCUAUUCGg -3'
miRNA:   3'- -CGCGGCGUAGCAGGCUUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 66609 0.77 0.485617
Target:  5'- uGCGCCGCGUUG-CCGgcGCCg--UCGc -3'
miRNA:   3'- -CGCGGCGUAGCaGGCuuCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 124182 0.75 0.625709
Target:  5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3'
miRNA:   3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 157871 0.75 0.625709
Target:  5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3'
miRNA:   3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 123463 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 158590 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 17098 0.74 0.656502
Target:  5'- cCGCCGcCAUCGUCCGcGGCCga--CGg -3'
miRNA:   3'- cGCGGC-GUAGCAGGCuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 21345 0.73 0.737102
Target:  5'- uGCGCUGCcguUCGUCCcGGGCCgccUCGg -3'
miRNA:   3'- -CGCGGCGu--AGCAGGcUUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 56077 0.72 0.77549
Target:  5'- gGCgGCCGCAggaUCUGAGGCCUGUUgCGc -3'
miRNA:   3'- -CG-CGGCGUagcAGGCUUCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 67224 0.71 0.811815
Target:  5'- cCGCCGCuuaCGUCgGggGCCUGcgCa -3'
miRNA:   3'- cGCGGCGua-GCAGgCuuCGGAUaaGc -5'
24549 3' -53.6 NC_005264.1 + 105082 0.7 0.853474
Target:  5'- gGCGCCuguUCGgcCUGAGGCCUGUUCc -3'
miRNA:   3'- -CGCGGcguAGCa-GGCUUCGGAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 77970 0.7 0.861229
Target:  5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3'
miRNA:   3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 67485 0.7 0.861229
Target:  5'- gGCGCCGCcgCGauacccUUCGAAGCCgacgCGc -3'
miRNA:   3'- -CGCGGCGuaGC------AGGCUUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 26029 0.7 0.861229
Target:  5'- aGCGagaCGCuucaugCGUCC--AGCCUGUUCGg -3'
miRNA:   3'- -CGCg--GCGua----GCAGGcuUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 12841 0.7 0.868775
Target:  5'- aGC-CCGCAUUGUucuucCCGAGGCCUuccgUUGg -3'
miRNA:   3'- -CGcGGCGUAGCA-----GGCUUCGGAua--AGC- -5'
24549 3' -53.6 NC_005264.1 + 160256 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 62031 0.7 0.876107
Target:  5'- cGCGCUcuaGCAagGUUCGGAGCCUGcugCGc -3'
miRNA:   3'- -CGCGG---CGUagCAGGCUUCGGAUaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 121796 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 77976 0.69 0.896769
Target:  5'- gGCGCCGCG-CGUaCCGGAGCggg--CGa -3'
miRNA:   3'- -CGCGGCGUaGCA-GGCUUCGgauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 25780 0.69 0.896769
Target:  5'- uCGCCGCucUCGUCCGGcGGCCa----- -3'
miRNA:   3'- cGCGGCGu-AGCAGGCU-UCGGauaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.