miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 46284 0.69 0.903197
Target:  5'- aGCGCCGCAgcUCGcucaUCCGgcGUCUuugcgUCGc -3'
miRNA:   3'- -CGCGGCGU--AGC----AGGCuuCGGAua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 26692 0.69 0.903197
Target:  5'- cCGCCGCggCGUa-GAAGCUgGUUCGg -3'
miRNA:   3'- cGCGGCGuaGCAggCUUCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 121460 0.69 0.909389
Target:  5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3'
miRNA:   3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 160593 0.69 0.909389
Target:  5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3'
miRNA:   3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 159952 0.68 0.92106
Target:  5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3'
miRNA:   3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 122101 0.68 0.92106
Target:  5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3'
miRNA:   3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 131997 0.68 0.92106
Target:  5'- cGCGCCGC--CG-CCGAcgacgacgcgAGCCcGUUCGa -3'
miRNA:   3'- -CGCGGCGuaGCaGGCU----------UCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 142181 0.68 0.926536
Target:  5'- aUGCCGUAUUccacaGUCUGGAGCCUGc--- -3'
miRNA:   3'- cGCGGCGUAG-----CAGGCUUCGGAUaagc -5'
24549 3' -53.6 NC_005264.1 + 7931 0.68 0.926536
Target:  5'- cGCGCguccaCGCGUCGUCCacGGCCg---CGg -3'
miRNA:   3'- -CGCG-----GCGUAGCAGGcuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 29794 0.68 0.936765
Target:  5'- uGCGCCGCcgCGcuacgcuucgaUCUGGAGCCg----- -3'
miRNA:   3'- -CGCGGCGuaGC-----------AGGCUUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 86117 0.68 0.936765
Target:  5'- uGCGCCGCGcaccaugagCGUCaacauGAGCCUcgUCa -3'
miRNA:   3'- -CGCGGCGUa--------GCAGgc---UUCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 46511 0.68 0.941519
Target:  5'- cGCGCCGUAUUG-CCaauGGCCcaUGUUCu -3'
miRNA:   3'- -CGCGGCGUAGCaGGcu-UCGG--AUAAGc -5'
24549 3' -53.6 NC_005264.1 + 23956 0.67 0.946036
Target:  5'- gGCGCCGguUCcuugCUGucGCCUAUUaCGa -3'
miRNA:   3'- -CGCGGCguAGca--GGCuuCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 76498 0.67 0.950317
Target:  5'- gGCGUcuCGCAUCGUUCGcGGCCa----- -3'
miRNA:   3'- -CGCG--GCGUAGCAGGCuUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 17196 0.67 0.950317
Target:  5'- uCGCCGCcuuugcCGUCCcuGAGUCUGUUUGg -3'
miRNA:   3'- cGCGGCGua----GCAGGc-UUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 6412 0.67 0.954365
Target:  5'- cCGCCGCAgaaccCGucUCCGuAGGCCcGUUCa -3'
miRNA:   3'- cGCGGCGUa----GC--AGGC-UUCGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 36698 0.67 0.954365
Target:  5'- uGCGcCCGCcUCGUC-GAGGCCgcgcgcUUCGc -3'
miRNA:   3'- -CGC-GGCGuAGCAGgCUUCGGau----AAGC- -5'
24549 3' -53.6 NC_005264.1 + 22236 0.67 0.958184
Target:  5'- gGCGCUaccguccaagGCGUCgGUCUGAAGCCgaacgcUCGc -3'
miRNA:   3'- -CGCGG----------CGUAG-CAGGCUUCGGaua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 18354 0.67 0.958184
Target:  5'- uGCGCCgaGCGUCaG-CCGAcaAGCCUGUcUCu -3'
miRNA:   3'- -CGCGG--CGUAG-CaGGCU--UCGGAUA-AGc -5'
24549 3' -53.6 NC_005264.1 + 133225 0.67 0.961779
Target:  5'- cGCGCCGUAgagCuUUCGAAGCCa----- -3'
miRNA:   3'- -CGCGGCGUa--GcAGGCUUCGGauaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.