Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24549 | 3' | -53.6 | NC_005264.1 | + | 32831 | 0.66 | 0.969517 |
Target: 5'- gGCGCCGUuccgGUCUGuAGCCUaaacaccacgaucauGUUCGa -3' miRNA: 3'- -CGCGGCGuag-CAGGCuUCGGA---------------UAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 136911 | 0.66 | 0.968312 |
Target: 5'- -aGCCGCGUCGUgCaGugcAGCCgcUUCGu -3' miRNA: 3'- cgCGGCGUAGCAgG-Cu--UCGGauAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 64493 | 0.66 | 0.968312 |
Target: 5'- cGCGCCGagagaGUCGcCUGGAccGCgCUGUUCu -3' miRNA: 3'- -CGCGGCg----UAGCaGGCUU--CG-GAUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 127585 | 0.66 | 0.968312 |
Target: 5'- cGCGCCGC---GUCCGgcGCCg----- -3' miRNA: 3'- -CGCGGCGuagCAGGCuuCGGauaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 37848 | 0.66 | 0.968312 |
Target: 5'- gGCGCCGaugcCGgcaaCCGAAGCCU--UCa -3' miRNA: 3'- -CGCGGCgua-GCa---GGCUUCGGAuaAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 46636 | 0.66 | 0.968312 |
Target: 5'- aGCGCCGCGcaaaagCCGcAGGCCgacgUCGa -3' miRNA: 3'- -CGCGGCGUagca--GGC-UUCGGaua-AGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 154468 | 0.66 | 0.968312 |
Target: 5'- cGCGCCGC---GUCCGgcGCCg----- -3' miRNA: 3'- -CGCGGCGuagCAGGCuuCGGauaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 58206 | 0.66 | 0.965153 |
Target: 5'- gGCGCCGCAcgaCGgccuguccgCCGggGCCg----- -3' miRNA: 3'- -CGCGGCGUa--GCa--------GGCuuCGGauaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 63424 | 0.66 | 0.965153 |
Target: 5'- aGgGCCuCAUCGaaaCCGggGCCgaccugaGUUCGg -3' miRNA: 3'- -CgCGGcGUAGCa--GGCuuCGGa------UAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 133225 | 0.67 | 0.961779 |
Target: 5'- cGCGCCGUAgagCuUUCGAAGCCa----- -3' miRNA: 3'- -CGCGGCGUa--GcAGGCUUCGGauaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 18354 | 0.67 | 0.958184 |
Target: 5'- uGCGCCgaGCGUCaG-CCGAcaAGCCUGUcUCu -3' miRNA: 3'- -CGCGG--CGUAG-CaGGCU--UCGGAUA-AGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 22236 | 0.67 | 0.958184 |
Target: 5'- gGCGCUaccguccaagGCGUCgGUCUGAAGCCgaacgcUCGc -3' miRNA: 3'- -CGCGG----------CGUAG-CAGGCUUCGGaua---AGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 6412 | 0.67 | 0.954365 |
Target: 5'- cCGCCGCAgaaccCGucUCCGuAGGCCcGUUCa -3' miRNA: 3'- cGCGGCGUa----GC--AGGC-UUCGGaUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 36698 | 0.67 | 0.954365 |
Target: 5'- uGCGcCCGCcUCGUC-GAGGCCgcgcgcUUCGc -3' miRNA: 3'- -CGC-GGCGuAGCAGgCUUCGGau----AAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 76498 | 0.67 | 0.950317 |
Target: 5'- gGCGUcuCGCAUCGUUCGcGGCCa----- -3' miRNA: 3'- -CGCG--GCGUAGCAGGCuUCGGauaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 17196 | 0.67 | 0.950317 |
Target: 5'- uCGCCGCcuuugcCGUCCcuGAGUCUGUUUGg -3' miRNA: 3'- cGCGGCGua----GCAGGc-UUCGGAUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 23956 | 0.67 | 0.946036 |
Target: 5'- gGCGCCGguUCcuugCUGucGCCUAUUaCGa -3' miRNA: 3'- -CGCGGCguAGca--GGCuuCGGAUAA-GC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 46511 | 0.68 | 0.941519 |
Target: 5'- cGCGCCGUAUUG-CCaauGGCCcaUGUUCu -3' miRNA: 3'- -CGCGGCGUAGCaGGcu-UCGG--AUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 86117 | 0.68 | 0.936765 |
Target: 5'- uGCGCCGCGcaccaugagCGUCaacauGAGCCUcgUCa -3' miRNA: 3'- -CGCGGCGUa--------GCAGgc---UUCGGAuaAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 29794 | 0.68 | 0.936765 |
Target: 5'- uGCGCCGCcgCGcuacgcuucgaUCUGGAGCCg----- -3' miRNA: 3'- -CGCGGCGuaGC-----------AGGCUUCGGauaagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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