Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24549 | 3' | -53.6 | NC_005264.1 | + | 7931 | 0.68 | 0.926536 |
Target: 5'- cGCGCguccaCGCGUCGUCCacGGCCg---CGg -3' miRNA: 3'- -CGCG-----GCGUAGCAGGcuUCGGauaaGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 142181 | 0.68 | 0.926536 |
Target: 5'- aUGCCGUAUUccacaGUCUGGAGCCUGc--- -3' miRNA: 3'- cGCGGCGUAG-----CAGGCUUCGGAUaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 131997 | 0.68 | 0.92106 |
Target: 5'- cGCGCCGC--CG-CCGAcgacgacgcgAGCCcGUUCGa -3' miRNA: 3'- -CGCGGCGuaGCaGGCU----------UCGGaUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 122101 | 0.68 | 0.92106 |
Target: 5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3' miRNA: 3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 159952 | 0.68 | 0.92106 |
Target: 5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3' miRNA: 3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 121460 | 0.69 | 0.909389 |
Target: 5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3' miRNA: 3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 160593 | 0.69 | 0.909389 |
Target: 5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3' miRNA: 3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 26692 | 0.69 | 0.903197 |
Target: 5'- cCGCCGCggCGUa-GAAGCUgGUUCGg -3' miRNA: 3'- cGCGGCGuaGCAggCUUCGGaUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 46284 | 0.69 | 0.903197 |
Target: 5'- aGCGCCGCAgcUCGcucaUCCGgcGUCUuugcgUCGc -3' miRNA: 3'- -CGCGGCGU--AGC----AGGCuuCGGAua---AGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 77976 | 0.69 | 0.896769 |
Target: 5'- gGCGCCGCG-CGUaCCGGAGCggg--CGa -3' miRNA: 3'- -CGCGGCGUaGCA-GGCUUCGgauaaGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 25780 | 0.69 | 0.896769 |
Target: 5'- uCGCCGCucUCGUCCGGcGGCCa----- -3' miRNA: 3'- cGCGGCGu-AGCAGGCU-UCGGauaagc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 121796 | 0.7 | 0.876107 |
Target: 5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3' miRNA: 3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 62031 | 0.7 | 0.876107 |
Target: 5'- cGCGCUcuaGCAagGUUCGGAGCCUGcugCGc -3' miRNA: 3'- -CGCGG---CGUagCAGGCUUCGGAUaa-GC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 160256 | 0.7 | 0.876107 |
Target: 5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3' miRNA: 3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 12841 | 0.7 | 0.868775 |
Target: 5'- aGC-CCGCAUUGUucuucCCGAGGCCUuccgUUGg -3' miRNA: 3'- -CGcGGCGUAGCA-----GGCUUCGGAua--AGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 26029 | 0.7 | 0.861229 |
Target: 5'- aGCGagaCGCuucaugCGUCC--AGCCUGUUCGg -3' miRNA: 3'- -CGCg--GCGua----GCAGGcuUCGGAUAAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 67485 | 0.7 | 0.861229 |
Target: 5'- gGCGCCGCcgCGauacccUUCGAAGCCgacgCGc -3' miRNA: 3'- -CGCGGCGuaGC------AGGCUUCGGauaaGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 77970 | 0.7 | 0.861229 |
Target: 5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3' miRNA: 3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 105082 | 0.7 | 0.853474 |
Target: 5'- gGCGCCuguUCGgcCUGAGGCCUGUUCc -3' miRNA: 3'- -CGCGGcguAGCa-GGCUUCGGAUAAGc -5' |
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24549 | 3' | -53.6 | NC_005264.1 | + | 67224 | 0.71 | 0.811815 |
Target: 5'- cCGCCGCuuaCGUCgGggGCCUGcgCa -3' miRNA: 3'- cGCGGCGua-GCAGgCuuCGGAUaaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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