miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 5157 1.12 0.003487
Target:  5'- cGCGCCGCAUCGUCCGAAGCCUAUUCGg -3'
miRNA:   3'- -CGCGGCGUAGCAGGCUUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 6412 0.67 0.954365
Target:  5'- cCGCCGCAgaaccCGucUCCGuAGGCCcGUUCa -3'
miRNA:   3'- cGCGGCGUa----GC--AGGC-UUCGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 7931 0.68 0.926536
Target:  5'- cGCGCguccaCGCGUCGUCCacGGCCg---CGg -3'
miRNA:   3'- -CGCG-----GCGUAGCAGGcuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 12147 0.66 0.976562
Target:  5'- gGCGCUGCccGUUG-CUGggGUCUcgUCu -3'
miRNA:   3'- -CGCGGCG--UAGCaGGCuuCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 12841 0.7 0.868775
Target:  5'- aGC-CCGCAUUGUucuucCCGAGGCCUuccgUUGg -3'
miRNA:   3'- -CGcGGCGUAGCA-----GGCUUCGGAua--AGC- -5'
24549 3' -53.6 NC_005264.1 + 17098 0.74 0.656502
Target:  5'- cCGCCGcCAUCGUCCGcGGCCga--CGg -3'
miRNA:   3'- cGCGGC-GUAGCAGGCuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 17196 0.67 0.950317
Target:  5'- uCGCCGCcuuugcCGUCCcuGAGUCUGUUUGg -3'
miRNA:   3'- cGCGGCGua----GCAGGc-UUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 18354 0.67 0.958184
Target:  5'- uGCGCCgaGCGUCaG-CCGAcaAGCCUGUcUCu -3'
miRNA:   3'- -CGCGG--CGUAG-CaGGCU--UCGGAUA-AGc -5'
24549 3' -53.6 NC_005264.1 + 21345 0.73 0.737102
Target:  5'- uGCGCUGCcguUCGUCCcGGGCCgccUCGg -3'
miRNA:   3'- -CGCGGCGu--AGCAGGcUUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 22236 0.67 0.958184
Target:  5'- gGCGCUaccguccaagGCGUCgGUCUGAAGCCgaacgcUCGc -3'
miRNA:   3'- -CGCGG----------CGUAG-CAGGCUUCGGaua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 23956 0.67 0.946036
Target:  5'- gGCGCCGguUCcuugCUGucGCCUAUUaCGa -3'
miRNA:   3'- -CGCGGCguAGca--GGCuuCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 25780 0.69 0.896769
Target:  5'- uCGCCGCucUCGUCCGGcGGCCa----- -3'
miRNA:   3'- cGCGGCGu-AGCAGGCU-UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 26029 0.7 0.861229
Target:  5'- aGCGagaCGCuucaugCGUCC--AGCCUGUUCGg -3'
miRNA:   3'- -CGCg--GCGua----GCAGGcuUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 26692 0.69 0.903197
Target:  5'- cCGCCGCggCGUa-GAAGCUgGUUCGg -3'
miRNA:   3'- cGCGGCGuaGCAggCUUCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 29794 0.68 0.936765
Target:  5'- uGCGCCGCcgCGcuacgcuucgaUCUGGAGCCg----- -3'
miRNA:   3'- -CGCGGCGuaGC-----------AGGCUUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 32831 0.66 0.969517
Target:  5'- gGCGCCGUuccgGUCUGuAGCCUaaacaccacgaucauGUUCGa -3'
miRNA:   3'- -CGCGGCGuag-CAGGCuUCGGA---------------UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 33574 0.66 0.978925
Target:  5'- uGCG-CGCGagGUagCGGAGCCaUGUUCGg -3'
miRNA:   3'- -CGCgGCGUagCAg-GCUUCGG-AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 35158 0.66 0.97401
Target:  5'- -gGCCGCGgugUGUCUGGugGGCaagGUUCGg -3'
miRNA:   3'- cgCGGCGUa--GCAGGCU--UCGga-UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 36698 0.67 0.954365
Target:  5'- uGCGcCCGCcUCGUC-GAGGCCgcgcgcUUCGc -3'
miRNA:   3'- -CGC-GGCGuAGCAGgCUUCGGau----AAGC- -5'
24549 3' -53.6 NC_005264.1 + 37370 0.66 0.978925
Target:  5'- gGCGCCGUAaaaugCGUCUGcGGCCcag-CGu -3'
miRNA:   3'- -CGCGGCGUa----GCAGGCuUCGGauaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.