miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 37848 0.66 0.968312
Target:  5'- gGCGCCGaugcCGgcaaCCGAAGCCU--UCa -3'
miRNA:   3'- -CGCGGCgua-GCa---GGCUUCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 46284 0.69 0.903197
Target:  5'- aGCGCCGCAgcUCGcucaUCCGgcGUCUuugcgUCGc -3'
miRNA:   3'- -CGCGGCGU--AGC----AGGCuuCGGAua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 46511 0.68 0.941519
Target:  5'- cGCGCCGUAUUG-CCaauGGCCcaUGUUCu -3'
miRNA:   3'- -CGCGGCGUAGCaGGcu-UCGG--AUAAGc -5'
24549 3' -53.6 NC_005264.1 + 46636 0.66 0.968312
Target:  5'- aGCGCCGCGcaaaagCCGcAGGCCgacgUCGa -3'
miRNA:   3'- -CGCGGCGUagca--GGC-UUCGGaua-AGC- -5'
24549 3' -53.6 NC_005264.1 + 56077 0.72 0.77549
Target:  5'- gGCgGCCGCAggaUCUGAGGCCUGUUgCGc -3'
miRNA:   3'- -CG-CGGCGUagcAGGCUUCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 58206 0.66 0.965153
Target:  5'- gGCGCCGCAcgaCGgccuguccgCCGggGCCg----- -3'
miRNA:   3'- -CGCGGCGUa--GCa--------GGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 60280 0.66 0.97401
Target:  5'- aGCGCCGCGUCGggcaUGAcGUacucggAUUCGg -3'
miRNA:   3'- -CGCGGCGUAGCag--GCUuCGga----UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 62031 0.7 0.876107
Target:  5'- cGCGCUcuaGCAagGUUCGGAGCCUGcugCGc -3'
miRNA:   3'- -CGCGG---CGUagCAGGCUUCGGAUaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 62301 0.66 0.97401
Target:  5'- cCGCgaGCGUCGUCCGGAcuagacccGCCcugUCGu -3'
miRNA:   3'- cGCGg-CGUAGCAGGCUU--------CGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 63424 0.66 0.965153
Target:  5'- aGgGCCuCAUCGaaaCCGggGCCgaccugaGUUCGg -3'
miRNA:   3'- -CgCGGcGUAGCa--GGCuuCGGa------UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 64176 0.66 0.977529
Target:  5'- aGCGCCGCcagcacuggGUCGagcaggaaccccacuUCCGAcucGGCCUug-CGg -3'
miRNA:   3'- -CGCGGCG---------UAGC---------------AGGCU---UCGGAuaaGC- -5'
24549 3' -53.6 NC_005264.1 + 64493 0.66 0.968312
Target:  5'- cGCGCCGagagaGUCGcCUGGAccGCgCUGUUCu -3'
miRNA:   3'- -CGCGGCg----UAGCaGGCUU--CG-GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 65298 0.66 0.976562
Target:  5'- gGCGUCGCGUUcaCCGgAGGCCggcacgacccggUGUUCGu -3'
miRNA:   3'- -CGCGGCGUAGcaGGC-UUCGG------------AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 66609 0.77 0.485617
Target:  5'- uGCGCCGCGUUG-CCGgcGCCg--UCGc -3'
miRNA:   3'- -CGCGGCGUAGCaGGCuuCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 67224 0.71 0.811815
Target:  5'- cCGCCGCuuaCGUCgGggGCCUGcgCa -3'
miRNA:   3'- cGCGGCGua-GCAGgCuuCGGAUaaGc -5'
24549 3' -53.6 NC_005264.1 + 67485 0.7 0.861229
Target:  5'- gGCGCCGCcgCGauacccUUCGAAGCCgacgCGc -3'
miRNA:   3'- -CGCGGCGuaGC------AGGCUUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 76498 0.67 0.950317
Target:  5'- gGCGUcuCGCAUCGUUCGcGGCCa----- -3'
miRNA:   3'- -CGCG--GCGUAGCAGGCuUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 77970 0.7 0.861229
Target:  5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3'
miRNA:   3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 77976 0.69 0.896769
Target:  5'- gGCGCCGCG-CGUaCCGGAGCggg--CGa -3'
miRNA:   3'- -CGCGGCGUaGCA-GGCUUCGgauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 81200 0.66 0.976315
Target:  5'- gGCGCCGC-UgGUUCGAccaccaaggcggaGGCCacgUCGg -3'
miRNA:   3'- -CGCGGCGuAgCAGGCU-------------UCGGauaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.