miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 160593 0.69 0.909389
Target:  5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3'
miRNA:   3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 160256 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 159952 0.68 0.92106
Target:  5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3'
miRNA:   3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 158590 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 157871 0.75 0.625709
Target:  5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3'
miRNA:   3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 154638 0.66 0.97401
Target:  5'- cGCGgCGCGUUGaagcugCCGGAGCUguuguugUCGa -3'
miRNA:   3'- -CGCgGCGUAGCa-----GGCUUCGGaua----AGC- -5'
24549 3' -53.6 NC_005264.1 + 154468 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 142181 0.68 0.926536
Target:  5'- aUGCCGUAUUccacaGUCUGGAGCCUGc--- -3'
miRNA:   3'- cGCGGCGUAG-----CAGGCUUCGGAUaagc -5'
24549 3' -53.6 NC_005264.1 + 136911 0.66 0.968312
Target:  5'- -aGCCGCGUCGUgCaGugcAGCCgcUUCGu -3'
miRNA:   3'- cgCGGCGUAGCAgG-Cu--UCGGauAAGC- -5'
24549 3' -53.6 NC_005264.1 + 136681 0.66 0.978697
Target:  5'- aGUGCCGCGaaaguccUCG-CCGcGGCCUGg--- -3'
miRNA:   3'- -CGCGGCGU-------AGCaGGCuUCGGAUaagc -5'
24549 3' -53.6 NC_005264.1 + 133612 0.66 0.976315
Target:  5'- cCGCCGCAUCGgagGAGGUcaugucaCUGUUCa -3'
miRNA:   3'- cGCGGCGUAGCaggCUUCG-------GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 133225 0.67 0.961779
Target:  5'- cGCGCCGUAgagCuUUCGAAGCCa----- -3'
miRNA:   3'- -CGCGGCGUa--GcAGGCUUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 131997 0.68 0.92106
Target:  5'- cGCGCCGC--CG-CCGAcgacgacgcgAGCCcGUUCGa -3'
miRNA:   3'- -CGCGGCGuaGCaGGCU----------UCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 127585 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 127415 0.66 0.97401
Target:  5'- cGCGgCGCGUUGaagcugCCGGAGCUguuguugUCGa -3'
miRNA:   3'- -CGCgGCGUAGCa-----GGCUUCGGaua----AGC- -5'
24549 3' -53.6 NC_005264.1 + 124182 0.75 0.625709
Target:  5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3'
miRNA:   3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 123463 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 122101 0.68 0.92106
Target:  5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3'
miRNA:   3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 121796 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 121460 0.69 0.909389
Target:  5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3'
miRNA:   3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.