miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 105082 0.7 0.853474
Target:  5'- gGCGCCuguUCGgcCUGAGGCCUGUUCc -3'
miRNA:   3'- -CGCGGcguAGCa-GGCUUCGGAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 100348 0.66 0.978925
Target:  5'- cGCGCCuGgAUCGUCCGAugaaAGUCa----- -3'
miRNA:   3'- -CGCGG-CgUAGCAGGCU----UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 98842 0.66 0.971262
Target:  5'- aGCGCCGaCAccguUCGUCUGAcGuCCgggUCGa -3'
miRNA:   3'- -CGCGGC-GU----AGCAGGCUuC-GGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 98753 0.66 0.978925
Target:  5'- gGCGCCGUucAUCuUgCGgcGCaCUGUUCGc -3'
miRNA:   3'- -CGCGGCG--UAGcAgGCuuCG-GAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 95625 0.66 0.978925
Target:  5'- uGCGCCGCAUC-UCCGGgcaaccgcagAGCaaacugCGg -3'
miRNA:   3'- -CGCGGCGUAGcAGGCU----------UCGgauaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 95455 0.66 0.97401
Target:  5'- uGCGgCGCAUCGUagaCGAcGCCgccgacUCGu -3'
miRNA:   3'- -CGCgGCGUAGCAg--GCUuCGGaua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 86747 0.66 0.978925
Target:  5'- cGCGCUGUucgCGcCCGuaGAGCCg--UCGa -3'
miRNA:   3'- -CGCGGCGua-GCaGGC--UUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 86117 0.68 0.936765
Target:  5'- uGCGCCGCGcaccaugagCGUCaacauGAGCCUcgUCa -3'
miRNA:   3'- -CGCGGCGUa--------GCAGgc---UUCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 86084 0.66 0.97401
Target:  5'- aGCGCCuGCGUUa--CGAGGCCU-UUCa -3'
miRNA:   3'- -CGCGG-CGUAGcagGCUUCGGAuAAGc -5'
24549 3' -53.6 NC_005264.1 + 81200 0.66 0.976315
Target:  5'- gGCGCCGC-UgGUUCGAccaccaaggcggaGGCCacgUCGg -3'
miRNA:   3'- -CGCGGCGuAgCAGGCU-------------UCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 77976 0.69 0.896769
Target:  5'- gGCGCCGCG-CGUaCCGGAGCggg--CGa -3'
miRNA:   3'- -CGCGGCGUaGCA-GGCUUCGgauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 77970 0.7 0.861229
Target:  5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3'
miRNA:   3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 76498 0.67 0.950317
Target:  5'- gGCGUcuCGCAUCGUUCGcGGCCa----- -3'
miRNA:   3'- -CGCG--GCGUAGCAGGCuUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 67485 0.7 0.861229
Target:  5'- gGCGCCGCcgCGauacccUUCGAAGCCgacgCGc -3'
miRNA:   3'- -CGCGGCGuaGC------AGGCUUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 67224 0.71 0.811815
Target:  5'- cCGCCGCuuaCGUCgGggGCCUGcgCa -3'
miRNA:   3'- cGCGGCGua-GCAGgCuuCGGAUaaGc -5'
24549 3' -53.6 NC_005264.1 + 66609 0.77 0.485617
Target:  5'- uGCGCCGCGUUG-CCGgcGCCg--UCGc -3'
miRNA:   3'- -CGCGGCGUAGCaGGCuuCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 65298 0.66 0.976562
Target:  5'- gGCGUCGCGUUcaCCGgAGGCCggcacgacccggUGUUCGu -3'
miRNA:   3'- -CGCGGCGUAGcaGGC-UUCGG------------AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 64493 0.66 0.968312
Target:  5'- cGCGCCGagagaGUCGcCUGGAccGCgCUGUUCu -3'
miRNA:   3'- -CGCGGCg----UAGCaGGCUU--CG-GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 64176 0.66 0.977529
Target:  5'- aGCGCCGCcagcacuggGUCGagcaggaaccccacuUCCGAcucGGCCUug-CGg -3'
miRNA:   3'- -CGCGGCG---------UAGC---------------AGGCU---UCGGAuaaGC- -5'
24549 3' -53.6 NC_005264.1 + 63424 0.66 0.965153
Target:  5'- aGgGCCuCAUCGaaaCCGggGCCgaccugaGUUCGg -3'
miRNA:   3'- -CgCGGcGUAGCa--GGCuuCGGa------UAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.