miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 5157 1.12 0.003487
Target:  5'- cGCGCCGCAUCGUCCGAAGCCUAUUCGg -3'
miRNA:   3'- -CGCGGCGUAGCAGGCUUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 136911 0.66 0.968312
Target:  5'- -aGCCGCGUCGUgCaGugcAGCCgcUUCGu -3'
miRNA:   3'- cgCGGCGUAGCAgG-Cu--UCGGauAAGC- -5'
24549 3' -53.6 NC_005264.1 + 154468 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 86747 0.66 0.978925
Target:  5'- cGCGCUGUucgCGcCCGuaGAGCCg--UCGa -3'
miRNA:   3'- -CGCGGCGua-GCaGGC--UUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 21345 0.73 0.737102
Target:  5'- uGCGCUGCcguUCGUCCcGGGCCgccUCGg -3'
miRNA:   3'- -CGCGGCGu--AGCAGGcUUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 12841 0.7 0.868775
Target:  5'- aGC-CCGCAUUGUucuucCCGAGGCCUuccgUUGg -3'
miRNA:   3'- -CGcGGCGUAGCA-----GGCUUCGGAua--AGC- -5'
24549 3' -53.6 NC_005264.1 + 121796 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 77976 0.69 0.896769
Target:  5'- gGCGCCGCG-CGUaCCGGAGCggg--CGa -3'
miRNA:   3'- -CGCGGCGUaGCA-GGCUUCGgauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 122101 0.68 0.92106
Target:  5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3'
miRNA:   3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 133225 0.67 0.961779
Target:  5'- cGCGCCGUAgagCuUUCGAAGCCa----- -3'
miRNA:   3'- -CGCGGCGUa--GcAGGCUUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 7931 0.68 0.926536
Target:  5'- cGCGCguccaCGCGUCGUCCacGGCCg---CGg -3'
miRNA:   3'- -CGCG-----GCGUAGCAGGcuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 121460 0.69 0.909389
Target:  5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3'
miRNA:   3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 66609 0.77 0.485617
Target:  5'- uGCGCCGCGUUG-CCGgcGCCg--UCGc -3'
miRNA:   3'- -CGCGGCGUAGCaGGCuuCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 86117 0.68 0.936765
Target:  5'- uGCGCCGCGcaccaugagCGUCaacauGAGCCUcgUCa -3'
miRNA:   3'- -CGCGGCGUa--------GCAGgc---UUCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 124182 0.75 0.625709
Target:  5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3'
miRNA:   3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 46284 0.69 0.903197
Target:  5'- aGCGCCGCAgcUCGcucaUCCGgcGUCUuugcgUCGc -3'
miRNA:   3'- -CGCGGCGU--AGC----AGGCuuCGGAua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 76498 0.67 0.950317
Target:  5'- gGCGUcuCGCAUCGUUCGcGGCCa----- -3'
miRNA:   3'- -CGCG--GCGUAGCAGGCuUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 64493 0.66 0.968312
Target:  5'- cGCGCCGagagaGUCGcCUGGAccGCgCUGUUCu -3'
miRNA:   3'- -CGCGGCg----UAGCaGGCUU--CG-GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 123463 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 62031 0.7 0.876107
Target:  5'- cGCGCUcuaGCAagGUUCGGAGCCUGcugCGc -3'
miRNA:   3'- -CGCGG---CGUagCAGGCUUCGGAUaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.