miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 62031 0.7 0.876107
Target:  5'- cGCGCUcuaGCAagGUUCGGAGCCUGcugCGc -3'
miRNA:   3'- -CGCGG---CGUagCAGGCUUCGGAUaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 64176 0.66 0.977529
Target:  5'- aGCGCCGCcagcacuggGUCGagcaggaaccccacuUCCGAcucGGCCUug-CGg -3'
miRNA:   3'- -CGCGGCG---------UAGC---------------AGGCU---UCGGAuaaGC- -5'
24549 3' -53.6 NC_005264.1 + 154468 0.66 0.968312
Target:  5'- cGCGCCGC---GUCCGgcGCCg----- -3'
miRNA:   3'- -CGCGGCGuagCAGGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 12841 0.7 0.868775
Target:  5'- aGC-CCGCAUUGUucuucCCGAGGCCUuccgUUGg -3'
miRNA:   3'- -CGcGGCGUAGCA-----GGCUUCGGAua--AGC- -5'
24549 3' -53.6 NC_005264.1 + 95455 0.66 0.97401
Target:  5'- uGCGgCGCAUCGUagaCGAcGCCgccgacUCGu -3'
miRNA:   3'- -CGCgGCGUAGCAg--GCUuCGGaua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 136681 0.66 0.978697
Target:  5'- aGUGCCGCGaaaguccUCG-CCGcGGCCUGg--- -3'
miRNA:   3'- -CGCGGCGU-------AGCaGGCuUCGGAUaagc -5'
24549 3' -53.6 NC_005264.1 + 12147 0.66 0.976562
Target:  5'- gGCGCUGCccGUUG-CUGggGUCUcgUCu -3'
miRNA:   3'- -CGCGGCG--UAGCaGGCuuCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 21345 0.73 0.737102
Target:  5'- uGCGCUGCcguUCGUCCcGGGCCgccUCGg -3'
miRNA:   3'- -CGCGGCGu--AGCAGGcUUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 123463 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 121796 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 7931 0.68 0.926536
Target:  5'- cGCGCguccaCGCGUCGUCCacGGCCg---CGg -3'
miRNA:   3'- -CGCG-----GCGUAGCAGGcuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 133612 0.66 0.976315
Target:  5'- cCGCCGCAUCGgagGAGGUcaugucaCUGUUCa -3'
miRNA:   3'- cGCGGCGUAGCaggCUUCG-------GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 77970 0.7 0.861229
Target:  5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3'
miRNA:   3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 160256 0.7 0.876107
Target:  5'- gGCGCCGUAcCGUCUGggGagUggUCGg -3'
miRNA:   3'- -CGCGGCGUaGCAGGCuuCggAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 25780 0.69 0.896769
Target:  5'- uCGCCGCucUCGUCCGGcGGCCa----- -3'
miRNA:   3'- cGCGGCGu-AGCAGGCU-UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 26692 0.69 0.903197
Target:  5'- cCGCCGCggCGUa-GAAGCUgGUUCGg -3'
miRNA:   3'- cGCGGCGuaGCAggCUUCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 160593 0.69 0.909389
Target:  5'- -gGCCGCGgacaCGUCCGuguGCCcGUUCu -3'
miRNA:   3'- cgCGGCGUa---GCAGGCuu-CGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 46636 0.66 0.968312
Target:  5'- aGCGCCGCGcaaaagCCGcAGGCCgacgUCGa -3'
miRNA:   3'- -CGCGGCGUagca--GGC-UUCGGaua-AGC- -5'
24549 3' -53.6 NC_005264.1 + 58206 0.66 0.965153
Target:  5'- gGCGCCGCAcgaCGgccuguccgCCGggGCCg----- -3'
miRNA:   3'- -CGCGGCGUa--GCa--------GGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 63424 0.66 0.965153
Target:  5'- aGgGCCuCAUCGaaaCCGggGCCgaccugaGUUCGg -3'
miRNA:   3'- -CgCGGcGUAGCa--GGCuuCGGa------UAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.