miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 81200 0.66 0.976315
Target:  5'- gGCGCCGC-UgGUUCGAccaccaaggcggaGGCCacgUCGg -3'
miRNA:   3'- -CGCGGCGuAgCAGGCU-------------UCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 65298 0.66 0.976562
Target:  5'- gGCGUCGCGUUcaCCGgAGGCCggcacgacccggUGUUCGu -3'
miRNA:   3'- -CGCGGCGUAGcaGGC-UUCGG------------AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 25780 0.69 0.896769
Target:  5'- uCGCCGCucUCGUCCGGcGGCCa----- -3'
miRNA:   3'- cGCGGCGu-AGCAGGCU-UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 100348 0.66 0.978925
Target:  5'- cGCGCCuGgAUCGUCCGAugaaAGUCa----- -3'
miRNA:   3'- -CGCGG-CgUAGCAGGCU----UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 26692 0.69 0.903197
Target:  5'- cCGCCGCggCGUa-GAAGCUgGUUCGg -3'
miRNA:   3'- cGCGGCGuaGCAggCUUCGGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 58206 0.66 0.965153
Target:  5'- gGCGCCGCAcgaCGgccuguccgCCGggGCCg----- -3'
miRNA:   3'- -CGCGGCGUa--GCa--------GGCuuCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 63424 0.66 0.965153
Target:  5'- aGgGCCuCAUCGaaaCCGggGCCgaccugaGUUCGg -3'
miRNA:   3'- -CgCGGcGUAGCa--GGCuuCGGa------UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 29794 0.68 0.936765
Target:  5'- uGCGCCGCcgCGcuacgcuucgaUCUGGAGCCg----- -3'
miRNA:   3'- -CGCGGCGuaGC-----------AGGCUUCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 67224 0.71 0.811815
Target:  5'- cCGCCGCuuaCGUCgGggGCCUGcgCa -3'
miRNA:   3'- cGCGGCGua-GCAGgCuuCGGAUaaGc -5'
24549 3' -53.6 NC_005264.1 + 56077 0.72 0.77549
Target:  5'- gGCgGCCGCAggaUCUGAGGCCUGUUgCGc -3'
miRNA:   3'- -CG-CGGCGUagcAGGCUUCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 17098 0.74 0.656502
Target:  5'- cCGCCGcCAUCGUCCGcGGCCga--CGg -3'
miRNA:   3'- cGCGGC-GUAGCAGGCuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 158590 0.75 0.635979
Target:  5'- aCGUCGuCAUCGUCUGAGGCCUcuggcugcgcgAUUCu -3'
miRNA:   3'- cGCGGC-GUAGCAGGCUUCGGA-----------UAAGc -5'
24549 3' -53.6 NC_005264.1 + 157871 0.75 0.625709
Target:  5'- uCGCCGuCGUCGUCgGugccGGCCUcgUCGg -3'
miRNA:   3'- cGCGGC-GUAGCAGgCu---UCGGAuaAGC- -5'
24549 3' -53.6 NC_005264.1 + 46511 0.68 0.941519
Target:  5'- cGCGCCGUAUUG-CCaauGGCCcaUGUUCu -3'
miRNA:   3'- -CGCGGCGUAGCaGGcu-UCGG--AUAAGc -5'
24549 3' -53.6 NC_005264.1 + 23956 0.67 0.946036
Target:  5'- gGCGCCGguUCcuugCUGucGCCUAUUaCGa -3'
miRNA:   3'- -CGCGGCguAGca--GGCuuCGGAUAA-GC- -5'
24549 3' -53.6 NC_005264.1 + 17196 0.67 0.950317
Target:  5'- uCGCCGCcuuugcCGUCCcuGAGUCUGUUUGg -3'
miRNA:   3'- cGCGGCGua----GCAGGc-UUCGGAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 36698 0.67 0.954365
Target:  5'- uGCGcCCGCcUCGUC-GAGGCCgcgcgcUUCGc -3'
miRNA:   3'- -CGC-GGCGuAGCAGgCUUCGGau----AAGC- -5'
24549 3' -53.6 NC_005264.1 + 6412 0.67 0.954365
Target:  5'- cCGCCGCAgaaccCGucUCCGuAGGCCcGUUCa -3'
miRNA:   3'- cGCGGCGUa----GC--AGGC-UUCGGaUAAGc -5'
24549 3' -53.6 NC_005264.1 + 159952 0.68 0.92106
Target:  5'- uCGCCGCGacuggCGgcggCCGAGGaCCcGUUCGg -3'
miRNA:   3'- cGCGGCGUa----GCa---GGCUUC-GGaUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 77970 0.7 0.861229
Target:  5'- uGCGCCGCGgugCGUCUcuGcGGCCgcgUCGu -3'
miRNA:   3'- -CGCGGCGUa--GCAGG--CuUCGGauaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.