Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 156228 | 0.66 | 0.924781 |
Target: 5'- gGCGGCUcagaggggacggucaGGGugUUgcCGGAGGCgGCGGc -3' miRNA: 3'- gCGCCGG---------------CUUugAA--GCCUUCGgCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 125824 | 0.66 | 0.924781 |
Target: 5'- gGCGGCUcagaggggacggucaGGGugUUgcCGGAGGCgGCGGc -3' miRNA: 3'- gCGCCGG---------------CUUugAA--GCCUUCGgCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 68092 | 0.66 | 0.922629 |
Target: 5'- uGCGGCCGuuaucuACgcgUCGGugguGGGCCucGCGGc -3' miRNA: 3'- gCGCCGGCuu----UGa--AGCC----UUCGG--CGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 30102 | 0.66 | 0.922629 |
Target: 5'- uCGCGaGUCGAGAUgcgggCGGcgcggcaccGAGCUGCGGc -3' miRNA: 3'- -GCGC-CGGCUUUGaa---GCC---------UUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 67960 | 0.66 | 0.922629 |
Target: 5'- uGCGGCuCGAGaaagGCUUCu---GCUGCGAa -3' miRNA: 3'- gCGCCG-GCUU----UGAAGccuuCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 26367 | 0.66 | 0.922629 |
Target: 5'- -cCGGCCGuauGACga-GaGGAGUCGCGAg -3' miRNA: 3'- gcGCCGGCu--UUGaagC-CUUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 132870 | 0.66 | 0.922629 |
Target: 5'- aGCGGCCaGGGACg-CGGAcauuggcauGCUGUGAg -3' miRNA: 3'- gCGCCGG-CUUUGaaGCCUu--------CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 33879 | 0.66 | 0.922629 |
Target: 5'- aCGCGGCuCGGAGCgaugcgCGuuAGCCaCGAu -3' miRNA: 3'- -GCGCCG-GCUUUGaa----GCcuUCGGcGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 32801 | 0.66 | 0.917086 |
Target: 5'- -cUGGCCGcAACcaucaucgCGGAAGCCuGCGGc -3' miRNA: 3'- gcGCCGGCuUUGaa------GCCUUCGG-CGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 52906 | 0.66 | 0.917086 |
Target: 5'- aGgGGCCGAGAgccgccgcgcUUUUGGGggcgGGCgGCGAa -3' miRNA: 3'- gCgCCGGCUUU----------GAAGCCU----UCGgCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 60784 | 0.66 | 0.917086 |
Target: 5'- cCGCGGCauacgagaaGggGC-UCGaGAAcgccGCCGCGGu -3' miRNA: 3'- -GCGCCGg--------CuuUGaAGC-CUU----CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 59113 | 0.66 | 0.917086 |
Target: 5'- gGCGGCCGccGCcgCuGAuGCCGCGc -3' miRNA: 3'- gCGCCGGCuuUGaaGcCUuCGGCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 158715 | 0.66 | 0.916519 |
Target: 5'- aGCGGCCGuguuuggcagaggGGACacccUCGGccccgucguGCCGCGAc -3' miRNA: 3'- gCGCCGGC-------------UUUGa---AGCCuu-------CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 123337 | 0.66 | 0.916519 |
Target: 5'- aGCGGCCGuguuuggcagaggGGACacccUCGGccccgucguGCCGCGAc -3' miRNA: 3'- gCGCCGGC-------------UUUGa---AGCCuu-------CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 93272 | 0.66 | 0.911312 |
Target: 5'- gGCGaGCUGAGAagccgaGGucGCCGCGGc -3' miRNA: 3'- gCGC-CGGCUUUgaag--CCuuCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 42954 | 0.66 | 0.911312 |
Target: 5'- gGUGGCgGAcgccGGCUagCGGGAGUCGUGc -3' miRNA: 3'- gCGCCGgCU----UUGAa-GCCUUCGGCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 71998 | 0.66 | 0.911312 |
Target: 5'- cCGCGGgCG--GCUUCGGccGCUauGCGGa -3' miRNA: 3'- -GCGCCgGCuuUGAAGCCuuCGG--CGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 28044 | 0.66 | 0.911312 |
Target: 5'- gGCGGCgGcgcAUUgggCGGAugccGCCGCGAc -3' miRNA: 3'- gCGCCGgCuu-UGAa--GCCUu---CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 133789 | 0.66 | 0.905308 |
Target: 5'- aGCGGUCGAGgagcACagCGGAGaCUGCGGc -3' miRNA: 3'- gCGCCGGCUU----UGaaGCCUUcGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 125445 | 0.66 | 0.905308 |
Target: 5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3' miRNA: 3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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