miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 156228 0.66 0.924781
Target:  5'- gGCGGCUcagaggggacggucaGGGugUUgcCGGAGGCgGCGGc -3'
miRNA:   3'- gCGCCGG---------------CUUugAA--GCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 133789 0.66 0.905308
Target:  5'- aGCGGUCGAGgagcACagCGGAGaCUGCGGc -3'
miRNA:   3'- gCGCCGGCUU----UGaaGCCUUcGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 129079 0.66 0.898441
Target:  5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3'
miRNA:   3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 152974 0.66 0.898441
Target:  5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3'
miRNA:   3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 24212 0.66 0.899077
Target:  5'- gGUGGCCGAAGCcagCGc--GCCGgGAu -3'
miRNA:   3'- gCGCCGGCUUUGaa-GCcuuCGGCgCU- -5'
24549 5' -56.4 NC_005264.1 + 15321 0.66 0.905308
Target:  5'- gGCGGCC-AAGuCUUCGGGAaaCGUGGu -3'
miRNA:   3'- gCGCCGGcUUU-GAAGCCUUcgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156608 0.66 0.905308
Target:  5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3'
miRNA:   3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61358 0.66 0.905308
Target:  5'- cCGCauGGCCGucaAAGCgUCGG-GGUCGCGGu -3'
miRNA:   3'- -GCG--CCGGC---UUUGaAGCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 158715 0.66 0.916519
Target:  5'- aGCGGCCGuguuuggcagaggGGACacccUCGGccccgucguGCCGCGAc -3'
miRNA:   3'- gCGCCGGC-------------UUUGa---AGCCuu-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 125445 0.66 0.905308
Target:  5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3'
miRNA:   3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61569 0.66 0.905308
Target:  5'- aGCGcCUGGAACg--GGGAGaCCGCGAc -3'
miRNA:   3'- gCGCcGGCUUUGaagCCUUC-GGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 93272 0.66 0.911312
Target:  5'- gGCGaGCUGAGAagccgaGGucGCCGCGGc -3'
miRNA:   3'- gCGC-CGGCUUUgaag--CCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 33879 0.66 0.922629
Target:  5'- aCGCGGCuCGGAGCgaugcgCGuuAGCCaCGAu -3'
miRNA:   3'- -GCGCCG-GCUUUGaa----GCcuUCGGcGCU- -5'
24549 5' -56.4 NC_005264.1 + 68092 0.66 0.922629
Target:  5'- uGCGGCCGuuaucuACgcgUCGGugguGGGCCucGCGGc -3'
miRNA:   3'- gCGCCGGCuu----UGa--AGCC----UUCGG--CGCU- -5'
24549 5' -56.4 NC_005264.1 + 60784 0.66 0.917086
Target:  5'- cCGCGGCauacgagaaGggGC-UCGaGAAcgccGCCGCGGu -3'
miRNA:   3'- -GCGCCGg--------CuuUGaAGC-CUU----CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 52906 0.66 0.917086
Target:  5'- aGgGGCCGAGAgccgccgcgcUUUUGGGggcgGGCgGCGAa -3'
miRNA:   3'- gCgCCGGCUUU----------GAAGCCU----UCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 123337 0.66 0.916519
Target:  5'- aGCGGCCGuguuuggcagaggGGACacccUCGGccccgucguGCCGCGAc -3'
miRNA:   3'- gCGCCGGC-------------UUUGa---AGCCuu-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 28044 0.66 0.911312
Target:  5'- gGCGGCgGcgcAUUgggCGGAugccGCCGCGAc -3'
miRNA:   3'- gCGCCGgCuu-UGAa--GCCUu---CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 71998 0.66 0.911312
Target:  5'- cCGCGGgCG--GCUUCGGccGCUauGCGGa -3'
miRNA:   3'- -GCGCCgGCuuUGAAGCCuuCGG--CGCU- -5'
24549 5' -56.4 NC_005264.1 + 42954 0.66 0.911312
Target:  5'- gGUGGCgGAcgccGGCUagCGGGAGUCGUGc -3'
miRNA:   3'- gCGCCGgCU----UUGAa-GCCUUCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.