Results 21 - 40 of 149 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 42954 | 0.66 | 0.911312 |
Target: 5'- gGUGGCgGAcgccGGCUagCGGGAGUCGUGc -3' miRNA: 3'- gCGCCGgCU----UUGAa-GCCUUCGGCGCu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 156228 | 0.66 | 0.924781 |
Target: 5'- gGCGGCUcagaggggacggucaGGGugUUgcCGGAGGCgGCGGc -3' miRNA: 3'- gCGCCGG---------------CUUugAA--GCCUUCGgCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 93272 | 0.66 | 0.911312 |
Target: 5'- gGCGaGCUGAGAagccgaGGucGCCGCGGc -3' miRNA: 3'- gCGC-CGGCUUUgaag--CCuuCGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 61569 | 0.66 | 0.905308 |
Target: 5'- aGCGcCUGGAACg--GGGAGaCCGCGAc -3' miRNA: 3'- gCGCcGGCUUUGaagCCUUC-GGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 125445 | 0.66 | 0.905308 |
Target: 5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3' miRNA: 3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 133789 | 0.66 | 0.905308 |
Target: 5'- aGCGGUCGAGgagcACagCGGAGaCUGCGGc -3' miRNA: 3'- gCGCCGGCUU----UGaaGCCUUcGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 60784 | 0.66 | 0.917086 |
Target: 5'- cCGCGGCauacgagaaGggGC-UCGaGAAcgccGCCGCGGu -3' miRNA: 3'- -GCGCCGg--------CuuUGaAGC-CUU----CGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 109901 | 0.67 | 0.879048 |
Target: 5'- gGgGGCCGAGGaggcCGGGcaaucuGCCGCGGc -3' miRNA: 3'- gCgCCGGCUUUgaa-GCCUu-----CGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 145070 | 0.67 | 0.864622 |
Target: 5'- aCGUGGUCGAAcugUCGGAAcUCGUGAa -3' miRNA: 3'- -GCGCCGGCUUugaAGCCUUcGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 155347 | 0.67 | 0.879048 |
Target: 5'- uCGCuGCCGuagagGAACgaaaGGAGGCCGCa- -3' miRNA: 3'- -GCGcCGGC-----UUUGaag-CCUUCGGCGcu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 109818 | 0.67 | 0.892621 |
Target: 5'- aCGUGGCCGAggUagUGGAcgcguaucuCCGCGAa -3' miRNA: 3'- -GCGCCGGCUuuGaaGCCUuc-------GGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 156487 | 0.67 | 0.857101 |
Target: 5'- gGCGGCagGggGCUUCGGcAGgaGCGc -3' miRNA: 3'- gCGCCGg-CuuUGAAGCCuUCggCGCu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 159338 | 0.67 | 0.885943 |
Target: 5'- gGCGG-CGAGACga-GGAGGaCgGCGAu -3' miRNA: 3'- gCGCCgGCUUUGaagCCUUC-GgCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 126706 | 0.67 | 0.879048 |
Target: 5'- uCGCuGCCGuagagGAACgaaaGGAGGCCGCa- -3' miRNA: 3'- -GCGcCGGC-----UUUGaag-CCUUCGGCGcu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 59304 | 0.67 | 0.871939 |
Target: 5'- gGCGGCgCGGcaucAGCggCGGcGGCCGCc- -3' miRNA: 3'- gCGCCG-GCU----UUGaaGCCuUCGGCGcu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 96550 | 0.67 | 0.871939 |
Target: 5'- cCGCGGCC-AGACUcaaugcUUGGcGGGCUGCGc -3' miRNA: 3'- -GCGCCGGcUUUGA------AGCC-UUCGGCGCu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 133391 | 0.67 | 0.871939 |
Target: 5'- gCGCGGacgaaCGAGGCccgcagUCGGuccGCCGCGu -3' miRNA: 3'- -GCGCCg----GCUUUGa-----AGCCuu-CGGCGCu -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 72050 | 0.67 | 0.871217 |
Target: 5'- cCGCGuGCCGucg---CGGAAcaccgccGCCGCGAa -3' miRNA: 3'- -GCGC-CGGCuuugaaGCCUU-------CGGCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 61611 | 0.67 | 0.871217 |
Target: 5'- aGCgGGCCgccgaaagcauacGAGACc-CGGAAGCgGCGAa -3' miRNA: 3'- gCG-CCGG-------------CUUUGaaGCCUUCGgCGCU- -5' |
|||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 128911 | 0.67 | 0.857101 |
Target: 5'- aGCGGCgCGAAACagCGucGAGgCGCGAg -3' miRNA: 3'- gCGCCG-GCUUUGaaGCc-UUCgGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home