miRNA display CGI


Results 41 - 60 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 10076 0.67 0.857101
Target:  5'- cCGCGGCgGAAuCUcccgcCGGggGCauCGCGGc -3'
miRNA:   3'- -GCGCCGgCUUuGAa----GCCuuCG--GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 125566 0.67 0.857101
Target:  5'- gGCGGCagGggGCUUCGGcAGgaGCGc -3'
miRNA:   3'- gCGCCGg-CuuUGAAGCCuUCggCGCu -5'
24549 5' -56.4 NC_005264.1 + 124735 0.67 0.892621
Target:  5'- gGCGGCgacguuCGuuACgccuucgCGGAGGCCGaCGAg -3'
miRNA:   3'- gCGCCG------GCuuUGaa-----GCCUUCGGC-GCU- -5'
24549 5' -56.4 NC_005264.1 + 40973 0.67 0.892621
Target:  5'- aGCGGCUcc-GCUcUCGGc-GCCGCGGa -3'
miRNA:   3'- gCGCCGGcuuUGA-AGCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154958 0.67 0.885943
Target:  5'- uCGCGGCCGcag--UCGGGcacgGGCgGCGu -3'
miRNA:   3'- -GCGCCGGCuuugaAGCCU----UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 8907 0.67 0.885943
Target:  5'- gGCGaGCCGAAACggCGGccacGCgCGCGc -3'
miRNA:   3'- gCGC-CGGCUUUGaaGCCuu--CG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 159338 0.67 0.885943
Target:  5'- gGCGG-CGAGACga-GGAGGaCgGCGAu -3'
miRNA:   3'- gCGCCgGCUUUGaagCCUUC-GgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 109901 0.67 0.879048
Target:  5'- gGgGGCCGAGGaggcCGGGcaaucuGCCGCGGc -3'
miRNA:   3'- gCgCCGGCUUUgaa-GCCUu-----CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 126706 0.67 0.879048
Target:  5'- uCGCuGCCGuagagGAACgaaaGGAGGCCGCa- -3'
miRNA:   3'- -GCGcCGGC-----UUUGaag-CCUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 59304 0.67 0.871939
Target:  5'- gGCGGCgCGGcaucAGCggCGGcGGCCGCc- -3'
miRNA:   3'- gCGCCG-GCU----UUGaaGCCuUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 133391 0.67 0.871939
Target:  5'- gCGCGGacgaaCGAGGCccgcagUCGGuccGCCGCGu -3'
miRNA:   3'- -GCGCCg----GCUUUGa-----AGCCuu-CGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 72050 0.67 0.871217
Target:  5'- cCGCGuGCCGucg---CGGAAcaccgccGCCGCGAa -3'
miRNA:   3'- -GCGC-CGGCuuugaaGCCUU-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 96550 0.67 0.871939
Target:  5'- cCGCGGCC-AGACUcaaugcUUGGcGGGCUGCGc -3'
miRNA:   3'- -GCGCCGGcUUUGA------AGCC-UUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 137516 0.67 0.892621
Target:  5'- gGgGGCCGGcaacuacgacGACUUCgaGGAAGaCCGCu- -3'
miRNA:   3'- gCgCCGGCU----------UUGAAG--CCUUC-GGCGcu -5'
24549 5' -56.4 NC_005264.1 + 127095 0.67 0.885943
Target:  5'- uCGCGGCCGcag--UCGGGcacgGGCgGCGu -3'
miRNA:   3'- -GCGCCGGCuuugaAGCCU----UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 138460 0.67 0.885943
Target:  5'- uCGCcGCCGG------GGGAGCCGCGAa -3'
miRNA:   3'- -GCGcCGGCUuugaagCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156487 0.67 0.857101
Target:  5'- gGCGGCagGggGCUUCGGcAGgaGCGc -3'
miRNA:   3'- gCGCCGg-CuuUGAAGCCuUCggCGCu -5'
24549 5' -56.4 NC_005264.1 + 128911 0.67 0.857101
Target:  5'- aGCGGCgCGAAACagCGucGAGgCGCGAg -3'
miRNA:   3'- gCGCCG-GCUUUGaaGCc-UUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61611 0.67 0.871217
Target:  5'- aGCgGGCCgccgaaagcauacGAGACc-CGGAAGCgGCGAa -3'
miRNA:   3'- gCG-CCGG-------------CUUUGaaGCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 109818 0.67 0.892621
Target:  5'- aCGUGGCCGAggUagUGGAcgcguaucuCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUuuGaaGCCUuc-------GGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.