miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 5191 1.09 0.003184
Target:  5'- uCGCGGCCGAAACUUCGGAAGCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUUUGAAGCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 71816 0.81 0.225836
Target:  5'- aGCGGCCGAAGCcgccCGcGggGUCGCGAa -3'
miRNA:   3'- gCGCCGGCUUUGaa--GC-CuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 75301 0.78 0.327578
Target:  5'- uGCGGaCGAcuCcUCGGAGGCCGCGGg -3'
miRNA:   3'- gCGCCgGCUuuGaAGCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 3150 0.76 0.406677
Target:  5'- uCGUGGUCGGAACUaugcCGGcGAGCCGCGu -3'
miRNA:   3'- -GCGCCGGCUUUGAa---GCC-UUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 96647 0.75 0.450469
Target:  5'- gGUGGCCGAcuCgcUGGAAGCCGCu- -3'
miRNA:   3'- gCGCCGGCUuuGaaGCCUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 36715 0.75 0.459536
Target:  5'- gCGCGGCCGAuGGCUccugcgcccgccUCGucGAGGCCGCGc -3'
miRNA:   3'- -GCGCCGGCU-UUGA------------AGC--CUUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 149455 0.75 0.477954
Target:  5'- uGCGGCgGAGGaggUCucggGGGAGCCGCGGg -3'
miRNA:   3'- gCGCCGgCUUUga-AG----CCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 132598 0.75 0.477954
Target:  5'- uGCGGCgGAGGaggUCucggGGGAGCCGCGGg -3'
miRNA:   3'- gCGCCGgCUUUga-AG----CCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 127267 0.73 0.56873
Target:  5'- uGCGGCCGcGACgugggugaagaggCGGAGGgCGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGaa-----------GCCUUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154785 0.73 0.56873
Target:  5'- uGCGGCCGcGACgugggugaagaggCGGAGGgCGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGaa-----------GCCUUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 113036 0.73 0.574703
Target:  5'- cCGCGGCCGcGACU----GGGCCGCGGc -3'
miRNA:   3'- -GCGCCGGCuUUGAagccUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 147446 0.72 0.594706
Target:  5'- uCGUGGCC-AAGCUUgCGGGcgcAGCUGCGGc -3'
miRNA:   3'- -GCGCCGGcUUUGAA-GCCU---UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157751 0.72 0.604751
Target:  5'- uCGCGGCCG-GACggCGG-GGCgGCGGc -3'
miRNA:   3'- -GCGCCGGCuUUGaaGCCuUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 124302 0.72 0.604751
Target:  5'- uCGCGGCCG-GACggCGG-GGCgGCGGc -3'
miRNA:   3'- -GCGCCGGCuUUGaaGCCuUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 121432 0.72 0.613809
Target:  5'- gCGcCGGCCugccuagGAAGaaagCGGAGGCCGCGGa -3'
miRNA:   3'- -GC-GCCGG-------CUUUgaa-GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 160621 0.72 0.613809
Target:  5'- gCGcCGGCCugccuagGAAGaaagCGGAGGCCGCGGa -3'
miRNA:   3'- -GC-GCCGG-------CUUUgaa-GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 63226 0.72 0.614816
Target:  5'- aGCGGCCGAGGCgaUGGucGCCGa-- -3'
miRNA:   3'- gCGCCGGCUUUGaaGCCuuCGGCgcu -5'
24549 5' -56.4 NC_005264.1 + 87615 0.72 0.624893
Target:  5'- gCGCGGCCGcgggcAGugUaCGGcGGGCCGUGAu -3'
miRNA:   3'- -GCGCCGGC-----UUugAaGCC-UUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 63639 0.72 0.624893
Target:  5'- aGCGGCCG------CGGAGGCCuGCGAg -3'
miRNA:   3'- gCGCCGGCuuugaaGCCUUCGG-CGCU- -5'
24549 5' -56.4 NC_005264.1 + 46053 0.72 0.634976
Target:  5'- gGCGGCCGAGACUaCuauGGCgGCGGa -3'
miRNA:   3'- gCGCCGGCUUUGAaGccuUCGgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.