miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 25340 0.71 0.645057
Target:  5'- gGCGGCCG-GACgagUUGGggGuaGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGa--AGCCuuCggCGCU- -5'
24549 5' -56.4 NC_005264.1 + 149414 0.71 0.655127
Target:  5'- uCGCGGUCGGGACgcgggCaGggGCgGCGGu -3'
miRNA:   3'- -GCGCCGGCUUUGaa---GcCuuCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 69204 0.71 0.655127
Target:  5'- uGUGGCCGAggUggcggUUCGGuuGGCCGUGc -3'
miRNA:   3'- gCGCCGGCUuuG-----AAGCCu-UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 62891 0.71 0.655127
Target:  5'- uCGCGGCCGAuACgcaGGuAGCaCGCGu -3'
miRNA:   3'- -GCGCCGGCUuUGaagCCuUCG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 132639 0.71 0.655127
Target:  5'- uCGCGGUCGGGACgcgggCaGggGCgGCGGu -3'
miRNA:   3'- -GCGCCGGCUUUGaa---GcCuuCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 128126 0.71 0.66518
Target:  5'- uGgGGCCGAAuauggguCUUCGGugaCCGCGAu -3'
miRNA:   3'- gCgCCGGCUUu------GAAGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 136541 0.71 0.66518
Target:  5'- aCGCGGaCGAAGacgCGGGAGCCgaucGCGAu -3'
miRNA:   3'- -GCGCCgGCUUUgaaGCCUUCGG----CGCU- -5'
24549 5' -56.4 NC_005264.1 + 153927 0.71 0.66518
Target:  5'- uGgGGCCGAAuauggguCUUCGGugaCCGCGAu -3'
miRNA:   3'- gCgCCGGCUUu------GAAGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61197 0.71 0.675207
Target:  5'- cCGCcuGGCCGAAGCcgaGGcagagaacgAGGCCGCGAu -3'
miRNA:   3'- -GCG--CCGGCUUUGaagCC---------UUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 110585 0.71 0.675207
Target:  5'- cCGUGGCCGGGugaguaggCGGggGCCcCGAg -3'
miRNA:   3'- -GCGCCGGCUUugaa----GCCuuCGGcGCU- -5'
24549 5' -56.4 NC_005264.1 + 138996 0.71 0.685199
Target:  5'- uCGUGGCUacaGAcAGCgauagCGGGAGCUGCGAg -3'
miRNA:   3'- -GCGCCGG---CU-UUGaa---GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 36512 0.71 0.694157
Target:  5'- gCGCGGCCucGACgaggCGGGcgcaggagccaucGGCCGCGc -3'
miRNA:   3'- -GCGCCGGcuUUGaa--GCCU-------------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 18039 0.71 0.69515
Target:  5'- uGCGuGCCGAcGCgaagCGGcggcGCCGCGAg -3'
miRNA:   3'- gCGC-CGGCUuUGaa--GCCuu--CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 92691 0.7 0.713907
Target:  5'- aCGCGGCCGccuccugGAGCUUauugccgcacgCGGGAGUaCGCGGc -3'
miRNA:   3'- -GCGCCGGC-------UUUGAA-----------GCCUUCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 21577 0.7 0.713907
Target:  5'- gGC-GCCGAGACcgUGGAAaggguguGCCGCGAa -3'
miRNA:   3'- gCGcCGGCUUUGaaGCCUU-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 60176 0.7 0.714888
Target:  5'- aCGCGGCCGucucGCUcgCGGccaccGCCGCGu -3'
miRNA:   3'- -GCGCCGGCuu--UGAa-GCCuu---CGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 98098 0.7 0.714888
Target:  5'- uGUGGaaGAAAgcgagagcCUUCGcGAGGCCGCGGa -3'
miRNA:   3'- gCGCCggCUUU--------GAAGC-CUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 107220 0.7 0.714888
Target:  5'- gCGCGGuuGGca-UUCGGcgccAGCCGCGGc -3'
miRNA:   3'- -GCGCCggCUuugAAGCCu---UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154614 0.7 0.724659
Target:  5'- aGCuGCUGcgGCUUCGGccgauGGCCGCGu -3'
miRNA:   3'- gCGcCGGCuuUGAAGCCu----UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 127439 0.7 0.724659
Target:  5'- aGCuGCUGcgGCUUCGGccgauGGCCGCGu -3'
miRNA:   3'- gCGcCGGCuuUGAAGCCu----UCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.