miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 24883 0.7 0.724659
Target:  5'- gGCGGCaCGAGGCUUCGcucuucguauAGUCGCGu -3'
miRNA:   3'- gCGCCG-GCUUUGAAGCcu--------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 26689 0.7 0.734352
Target:  5'- cCGCGGCguaGAAGCUgguUCGGc-GCCGCa- -3'
miRNA:   3'- -GCGCCGg--CUUUGA---AGCCuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 109485 0.7 0.734352
Target:  5'- cCGCGGCUaGAGACaacagcaaUGGAAGCuCGCGGu -3'
miRNA:   3'- -GCGCCGG-CUUUGaa------GCCUUCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 17085 0.7 0.734352
Target:  5'- cCGCGGCCGAcgggAAUUUCucu-GCUGCGAc -3'
miRNA:   3'- -GCGCCGGCU----UUGAAGccuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 66217 0.7 0.734352
Target:  5'- cCGCGGCCagcGAagGACUUgGcGAGCUGCGGg -3'
miRNA:   3'- -GCGCCGG---CU--UUGAAgCcUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 20343 0.7 0.741087
Target:  5'- -uCGGCCGAAcugguuuauuuuuuGCgcgCGGuAGCCGCGGc -3'
miRNA:   3'- gcGCCGGCUU--------------UGaa-GCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 5362 0.7 0.741087
Target:  5'- -uCGGCCGcgagggccuccgaaAGGCUUCGGAcgaugcggcgcGGCCGCGc -3'
miRNA:   3'- gcGCCGGC--------------UUUGAAGCCU-----------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 59988 0.7 0.743959
Target:  5'- gGUGGCCGcGAGCgagaCGGccgcguGGCCGCGGc -3'
miRNA:   3'- gCGCCGGC-UUUGaa--GCCu-----UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 30714 0.7 0.743959
Target:  5'- cCGCGGUCGGccaAACUgcgCGaGAGCCGCu- -3'
miRNA:   3'- -GCGCCGGCU---UUGAa--GCcUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 1125 0.7 0.753471
Target:  5'- gCGCgGGUCGuuguGCaugCGGggGUCGCGAa -3'
miRNA:   3'- -GCG-CCGGCuu--UGaa-GCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 118237 0.69 0.76288
Target:  5'- uCGuuGCCGAcGCcgCGGucGCCGCGGc -3'
miRNA:   3'- -GCgcCGGCUuUGaaGCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 42733 0.69 0.76288
Target:  5'- uGcCGGCgCGaAGACgcgCGGAAGCUGCGc -3'
miRNA:   3'- gC-GCCG-GC-UUUGaa-GCCUUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 112731 0.69 0.771252
Target:  5'- aGCGGCU--AACaggUCGGcgguuacggccugGAGCCGCGAg -3'
miRNA:   3'- gCGCCGGcuUUGa--AGCC-------------UUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 153212 0.69 0.772176
Target:  5'- aCGCGGCCGGcuACaUgGGccGCCGCa- -3'
miRNA:   3'- -GCGCCGGCUu-UGaAgCCuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 22478 0.69 0.772176
Target:  5'- gCGCGGCUGGGAUggcagaaGGgcGCgCGCGGg -3'
miRNA:   3'- -GCGCCGGCUUUGaag----CCuuCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 115912 0.69 0.772176
Target:  5'- cCGCggauGGCCGuaauGCUUUGGggGUacgaCGCGAa -3'
miRNA:   3'- -GCG----CCGGCuu--UGAAGCCuuCG----GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 128840 0.69 0.772176
Target:  5'- aCGCGGCCGGcuACaUgGGccGCCGCa- -3'
miRNA:   3'- -GCGCCGGCUu-UGaAgCCuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 43401 0.69 0.772176
Target:  5'- gGCGGCCuGGGCagCGaGAucgcccgccAGCCGCGAg -3'
miRNA:   3'- gCGCCGGcUUUGaaGC-CU---------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156181 0.69 0.775861
Target:  5'- gGCGccaggaucucuGCCGGAGCUUcCGGAcaugugcccccgcguGGCCGUGGg -3'
miRNA:   3'- gCGC-----------CGGCUUUGAA-GCCU---------------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 125872 0.69 0.775861
Target:  5'- gGCGccaggaucucuGCCGGAGCUUcCGGAcaugugcccccgcguGGCCGUGGg -3'
miRNA:   3'- gCGC-----------CGGCUUUGAA-GCCU---------------UCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.