miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 61569 0.66 0.905308
Target:  5'- aGCGcCUGGAACg--GGGAGaCCGCGAc -3'
miRNA:   3'- gCGCcGGCUUUGaagCCUUC-GGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 125445 0.66 0.905308
Target:  5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3'
miRNA:   3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 133789 0.66 0.905308
Target:  5'- aGCGGUCGAGgagcACagCGGAGaCUGCGGc -3'
miRNA:   3'- gCGCCGGCUU----UGaaGCCUUcGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 15321 0.66 0.905308
Target:  5'- gGCGGCC-AAGuCUUCGGGAaaCGUGGu -3'
miRNA:   3'- gCGCCGGcUUU-GAAGCCUUcgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 24212 0.66 0.899077
Target:  5'- gGUGGCCGAAGCcagCGc--GCCGgGAu -3'
miRNA:   3'- gCGCCGGCUUUGaa-GCcuuCGGCgCU- -5'
24549 5' -56.4 NC_005264.1 + 129079 0.66 0.898441
Target:  5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3'
miRNA:   3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 152974 0.66 0.898441
Target:  5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3'
miRNA:   3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 137424 0.67 0.892621
Target:  5'- uGCuuGGCCGAGuACUUCGGccuGGCgGUGc -3'
miRNA:   3'- gCG--CCGGCUU-UGAAGCCu--UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 137516 0.67 0.892621
Target:  5'- gGgGGCCGGcaacuacgacGACUUCgaGGAAGaCCGCu- -3'
miRNA:   3'- gCgCCGGCU----------UUGAAG--CCUUC-GGCGcu -5'
24549 5' -56.4 NC_005264.1 + 109818 0.67 0.892621
Target:  5'- aCGUGGCCGAggUagUGGAcgcguaucuCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUuuGaaGCCUuc-------GGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157318 0.67 0.892621
Target:  5'- gGCGGCgacguuCGuuACgccuucgCGGAGGCCGaCGAg -3'
miRNA:   3'- gCGCCG------GCuuUGaa-----GCCUUCGGC-GCU- -5'
24549 5' -56.4 NC_005264.1 + 124735 0.67 0.892621
Target:  5'- gGCGGCgacguuCGuuACgccuucgCGGAGGCCGaCGAg -3'
miRNA:   3'- gCGCCG------GCuuUGaa-----GCCUUCGGC-GCU- -5'
24549 5' -56.4 NC_005264.1 + 40973 0.67 0.892621
Target:  5'- aGCGGCUcc-GCUcUCGGc-GCCGCGGa -3'
miRNA:   3'- gCGCCGGcuuUGA-AGCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 127095 0.67 0.885943
Target:  5'- uCGCGGCCGcag--UCGGGcacgGGCgGCGu -3'
miRNA:   3'- -GCGCCGGCuuugaAGCCU----UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 138460 0.67 0.885943
Target:  5'- uCGCcGCCGG------GGGAGCCGCGAa -3'
miRNA:   3'- -GCGcCGGCUuugaagCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154958 0.67 0.885943
Target:  5'- uCGCGGCCGcag--UCGGGcacgGGCgGCGu -3'
miRNA:   3'- -GCGCCGGCuuugaAGCCU----UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 8907 0.67 0.885943
Target:  5'- gGCGaGCCGAAACggCGGccacGCgCGCGc -3'
miRNA:   3'- gCGC-CGGCUUUGaaGCCuu--CG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 159338 0.67 0.885943
Target:  5'- gGCGG-CGAGACga-GGAGGaCgGCGAu -3'
miRNA:   3'- gCGCCgGCUUUGaagCCUUC-GgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 122715 0.67 0.885943
Target:  5'- gGCGG-CGAGACga-GGAGGaCgGCGAu -3'
miRNA:   3'- gCGCCgGCUUUGaagCCUUC-GgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 17684 0.67 0.885943
Target:  5'- gCGCaGCCGAGGCcgCGGcGGCuCGUGu -3'
miRNA:   3'- -GCGcCGGCUUUGaaGCCuUCG-GCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.