miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 126706 0.67 0.879048
Target:  5'- uCGCuGCCGuagagGAACgaaaGGAGGCCGCa- -3'
miRNA:   3'- -GCGcCGGC-----UUUGaag-CCUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 155347 0.67 0.879048
Target:  5'- uCGCuGCCGuagagGAACgaaaGGAGGCCGCa- -3'
miRNA:   3'- -GCGcCGGC-----UUUGaag-CCUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 109901 0.67 0.879048
Target:  5'- gGgGGCCGAGGaggcCGGGcaaucuGCCGCGGc -3'
miRNA:   3'- gCgCCGGCUUUgaa-GCCUu-----CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 57996 0.67 0.877643
Target:  5'- gGCGGCCGugGCUcagcggccccggCGGAcaGGCCGUc- -3'
miRNA:   3'- gCGCCGGCuuUGAa-----------GCCU--UCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 59304 0.67 0.871939
Target:  5'- gGCGGCgCGGcaucAGCggCGGcGGCCGCc- -3'
miRNA:   3'- gCGCCG-GCU----UUGaaGCCuUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 133391 0.67 0.871939
Target:  5'- gCGCGGacgaaCGAGGCccgcagUCGGuccGCCGCGu -3'
miRNA:   3'- -GCGCCg----GCUUUGa-----AGCCuu-CGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 96550 0.67 0.871939
Target:  5'- cCGCGGCC-AGACUcaaugcUUGGcGGGCUGCGc -3'
miRNA:   3'- -GCGCCGGcUUUGA------AGCC-UUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 72050 0.67 0.871217
Target:  5'- cCGCGuGCCGucg---CGGAAcaccgccGCCGCGAa -3'
miRNA:   3'- -GCGC-CGGCuuugaaGCCUU-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61611 0.67 0.871217
Target:  5'- aGCgGGCCgccgaaagcauacGAGACc-CGGAAGCgGCGAa -3'
miRNA:   3'- gCG-CCGG-------------CUUUGaaGCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 145070 0.67 0.864622
Target:  5'- aCGUGGUCGAAcugUCGGAAcUCGUGAa -3'
miRNA:   3'- -GCGCCGGCUUugaAGCCUUcGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 136797 0.67 0.864622
Target:  5'- gCGUGGCCGGgcggacaaAGCUggCGGAcGCUugGCGAu -3'
miRNA:   3'- -GCGCCGGCU--------UUGAa-GCCUuCGG--CGCU- -5'
24549 5' -56.4 NC_005264.1 + 116419 0.67 0.864622
Target:  5'- cCGCGGCagGucGCUggGGGcgucuGGCCGCGGg -3'
miRNA:   3'- -GCGCCGg-CuuUGAagCCU-----UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 5150 0.67 0.862387
Target:  5'- gCGCGGCCgcgccgcaucguccGAAGCcuaUUCGGAGGCCc--- -3'
miRNA:   3'- -GCGCCGG--------------CUUUG---AAGCCUUCGGcgcu -5'
24549 5' -56.4 NC_005264.1 + 125566 0.67 0.857101
Target:  5'- gGCGGCagGggGCUUCGGcAGgaGCGc -3'
miRNA:   3'- gCGCCGg-CuuUGAAGCCuUCggCGCu -5'
24549 5' -56.4 NC_005264.1 + 153142 0.67 0.857101
Target:  5'- aGCGGCgCGAAACagCGucGAGgCGCGAg -3'
miRNA:   3'- gCGCCG-GCUUUGaaGCc-UUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156487 0.67 0.857101
Target:  5'- gGCGGCagGggGCUUCGGcAGgaGCGc -3'
miRNA:   3'- gCGCCGg-CuuUGAAGCCuUCggCGCu -5'
24549 5' -56.4 NC_005264.1 + 128911 0.67 0.857101
Target:  5'- aGCGGCgCGAAACagCGucGAGgCGCGAg -3'
miRNA:   3'- gCGCCG-GCUUUGaaGCc-UUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 34987 0.67 0.857101
Target:  5'- uCGCGcGCCGGguucuaGACcgcCGGccGCCGCGGa -3'
miRNA:   3'- -GCGC-CGGCU------UUGaa-GCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 82196 0.67 0.857101
Target:  5'- aGCGGCCGug---UCGu-GGCCGCGc -3'
miRNA:   3'- gCGCCGGCuuugaAGCcuUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 10076 0.67 0.857101
Target:  5'- cCGCGGCgGAAuCUcccgcCGGggGCauCGCGGc -3'
miRNA:   3'- -GCGCCGgCUUuGAa----GCCuuCG--GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.