miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 24162 0.68 0.849383
Target:  5'- gGCGaGUCGAGGCUgCuGcGGCCGCGGu -3'
miRNA:   3'- gCGC-CGGCUUUGAaGcCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 19935 0.68 0.849383
Target:  5'- uCGCGGCgCGAuGCU--GGggGCacgGCGAa -3'
miRNA:   3'- -GCGCCG-GCUuUGAagCCuuCGg--CGCU- -5'
24549 5' -56.4 NC_005264.1 + 44634 0.68 0.849383
Target:  5'- cCGCGGCCGAGggaguGCUgauguaGAAGCUGCc- -3'
miRNA:   3'- -GCGCCGGCUU-----UGAagc---CUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 8122 0.68 0.849383
Target:  5'- cCGCGGCCGuggacGACgcgUGGAcGCgCGCGu -3'
miRNA:   3'- -GCGCCGGCu----UUGaa-GCCUuCG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 68580 0.68 0.84466
Target:  5'- uGCGGCCaGAACUggcaccuugccauuuUCGuGuGGCCGCGu -3'
miRNA:   3'- gCGCCGGcUUUGA---------------AGC-CuUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 67658 0.68 0.841474
Target:  5'- gGCGGCCc-GGCcUCGGGuuucacgagcuGGCCGCGc -3'
miRNA:   3'- gCGCCGGcuUUGaAGCCU-----------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 37646 0.68 0.833379
Target:  5'- aCGUGGCgGAGaugaagGCUUCGGuuGCCgGCa- -3'
miRNA:   3'- -GCGCCGgCUU------UGAAGCCuuCGG-CGcu -5'
24549 5' -56.4 NC_005264.1 + 114287 0.68 0.833379
Target:  5'- uGCGGacgaCGAAgGCgaCGGggGCgCGCGGg -3'
miRNA:   3'- gCGCCg---GCUU-UGaaGCCuuCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 109743 0.68 0.833379
Target:  5'- -cUGGCCGcgcGGGCUUCGGggGCaaCGgGAa -3'
miRNA:   3'- gcGCCGGC---UUUGAAGCCuuCG--GCgCU- -5'
24549 5' -56.4 NC_005264.1 + 40787 0.68 0.825108
Target:  5'- cCGCGgcGCCGAGAg--CGGAGccgcuuGCCGCGGg -3'
miRNA:   3'- -GCGC--CGGCUUUgaaGCCUU------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 124858 0.68 0.825108
Target:  5'- gGUGGCCGccAC-UCGccuGGCCGCGGu -3'
miRNA:   3'- gCGCCGGCuuUGaAGCcu-UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157194 0.68 0.825108
Target:  5'- gGUGGCCGccAC-UCGccuGGCCGCGGu -3'
miRNA:   3'- gCGCCGGCuuUGaAGCcu-UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 58183 0.68 0.825108
Target:  5'- cCGgGGCCGcuGAGCcaCGGccGCCGCGc -3'
miRNA:   3'- -GCgCCGGC--UUUGaaGCCuuCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 30452 0.68 0.820063
Target:  5'- uCGCGGCCGcgcuacACUUCGGugcagcguggcAccgcuuugccgcgcuGGCCGCGGa -3'
miRNA:   3'- -GCGCCGGCuu----UGAAGCC-----------U---------------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 44336 0.68 0.815813
Target:  5'- aCGCGGUugcccugCGGGugUUgGGAgaagGGCUGCGAg -3'
miRNA:   3'- -GCGCCG-------GCUUugAAgCCU----UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 79572 0.68 0.808061
Target:  5'- uGCGGCCGAAAUUgaaGuucGCCGCGc -3'
miRNA:   3'- gCGCCGGCUUUGAag-CcuuCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 124431 0.68 0.808061
Target:  5'- cCGCGGaaGAAgaGCUUCGccucGCCGCGGc -3'
miRNA:   3'- -GCGCCggCUU--UGAAGCcuu-CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157622 0.68 0.808061
Target:  5'- cCGCGGaaGAAgaGCUUCGccucGCCGCGGc -3'
miRNA:   3'- -GCGCCggCUU--UGAAGCcuu-CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 136036 0.68 0.807192
Target:  5'- gCGCGGCCc--ACUUCuccucguGGAAGcCCGCGu -3'
miRNA:   3'- -GCGCCGGcuuUGAAG-------CCUUC-GGCGCu -5'
24549 5' -56.4 NC_005264.1 + 106423 0.69 0.802823
Target:  5'- cCGCGGgcucaCGAAgauccugcacgagcgGCUUCGGAGGCgCGCu- -3'
miRNA:   3'- -GCGCCg----GCUU---------------UGAAGCCUUCG-GCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.