miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 1125 0.7 0.753471
Target:  5'- gCGCgGGUCGuuguGCaugCGGggGUCGCGAa -3'
miRNA:   3'- -GCG-CCGGCuu--UGaa-GCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 3150 0.76 0.406677
Target:  5'- uCGUGGUCGGAACUaugcCGGcGAGCCGCGu -3'
miRNA:   3'- -GCGCCGGCUUUGAa---GCC-UUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 5150 0.67 0.862387
Target:  5'- gCGCGGCCgcgccgcaucguccGAAGCcuaUUCGGAGGCCc--- -3'
miRNA:   3'- -GCGCCGG--------------CUUUG---AAGCCUUCGGcgcu -5'
24549 5' -56.4 NC_005264.1 + 5191 1.09 0.003184
Target:  5'- uCGCGGCCGAAACUUCGGAAGCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUUUGAAGCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 5362 0.7 0.741087
Target:  5'- -uCGGCCGcgagggccuccgaaAGGCUUCGGAcgaugcggcgcGGCCGCGc -3'
miRNA:   3'- gcGCCGGC--------------UUUGAAGCCU-----------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 8122 0.68 0.849383
Target:  5'- cCGCGGCCGuggacGACgcgUGGAcGCgCGCGu -3'
miRNA:   3'- -GCGCCGGCu----UUGaa-GCCUuCG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 8907 0.67 0.885943
Target:  5'- gGCGaGCCGAAACggCGGccacGCgCGCGc -3'
miRNA:   3'- gCGC-CGGCUUUGaaGCCuu--CG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 10076 0.67 0.857101
Target:  5'- cCGCGGCgGAAuCUcccgcCGGggGCauCGCGGc -3'
miRNA:   3'- -GCGCCGgCUUuGAa----GCCuuCG--GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 15321 0.66 0.905308
Target:  5'- gGCGGCC-AAGuCUUCGGGAaaCGUGGu -3'
miRNA:   3'- gCGCCGGcUUU-GAAGCCUUcgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 17085 0.7 0.734352
Target:  5'- cCGCGGCCGAcgggAAUUUCucu-GCUGCGAc -3'
miRNA:   3'- -GCGCCGGCU----UUGAAGccuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 17684 0.67 0.885943
Target:  5'- gCGCaGCCGAGGCcgCGGcGGCuCGUGu -3'
miRNA:   3'- -GCGcCGGCUUUGaaGCCuUCG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 18039 0.71 0.69515
Target:  5'- uGCGuGCCGAcGCgaagCGGcggcGCCGCGAg -3'
miRNA:   3'- gCGC-CGGCUuUGaa--GCCuu--CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 19935 0.68 0.849383
Target:  5'- uCGCGGCgCGAuGCU--GGggGCacgGCGAa -3'
miRNA:   3'- -GCGCCG-GCUuUGAagCCuuCGg--CGCU- -5'
24549 5' -56.4 NC_005264.1 + 20343 0.7 0.741087
Target:  5'- -uCGGCCGAAcugguuuauuuuuuGCgcgCGGuAGCCGCGGc -3'
miRNA:   3'- gcGCCGGCUU--------------UGaa-GCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 21577 0.7 0.713907
Target:  5'- gGC-GCCGAGACcgUGGAAaggguguGCCGCGAa -3'
miRNA:   3'- gCGcCGGCUUUGaaGCCUU-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 22478 0.69 0.772176
Target:  5'- gCGCGGCUGGGAUggcagaaGGgcGCgCGCGGg -3'
miRNA:   3'- -GCGCCGGCUUUGaag----CCuuCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 24162 0.68 0.849383
Target:  5'- gGCGaGUCGAGGCUgCuGcGGCCGCGGu -3'
miRNA:   3'- gCGC-CGGCUUUGAaGcCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 24212 0.66 0.899077
Target:  5'- gGUGGCCGAAGCcagCGc--GCCGgGAu -3'
miRNA:   3'- gCGCCGGCUUUGaa-GCcuuCGGCgCU- -5'
24549 5' -56.4 NC_005264.1 + 24883 0.7 0.724659
Target:  5'- gGCGGCaCGAGGCUUCGcucuucguauAGUCGCGu -3'
miRNA:   3'- gCGCCG-GCUUUGAAGCcu--------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 25340 0.71 0.645057
Target:  5'- gGCGGCCG-GACgagUUGGggGuaGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGa--AGCCuuCggCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.