miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 26367 0.66 0.922629
Target:  5'- -cCGGCCGuauGACga-GaGGAGUCGCGAg -3'
miRNA:   3'- gcGCCGGCu--UUGaagC-CUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 26689 0.7 0.734352
Target:  5'- cCGCGGCguaGAAGCUgguUCGGc-GCCGCa- -3'
miRNA:   3'- -GCGCCGg--CUUUGA---AGCCuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 28044 0.66 0.911312
Target:  5'- gGCGGCgGcgcAUUgggCGGAugccGCCGCGAc -3'
miRNA:   3'- gCGCCGgCuu-UGAa--GCCUu---CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 30102 0.66 0.922629
Target:  5'- uCGCGaGUCGAGAUgcgggCGGcgcggcaccGAGCUGCGGc -3'
miRNA:   3'- -GCGC-CGGCUUUGaa---GCC---------UUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 30452 0.68 0.820063
Target:  5'- uCGCGGCCGcgcuacACUUCGGugcagcguggcAccgcuuugccgcgcuGGCCGCGGa -3'
miRNA:   3'- -GCGCCGGCuu----UGAAGCC-----------U---------------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 30714 0.7 0.743959
Target:  5'- cCGCGGUCGGccaAACUgcgCGaGAGCCGCu- -3'
miRNA:   3'- -GCGCCGGCU---UUGAa--GCcUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 32801 0.66 0.917086
Target:  5'- -cUGGCCGcAACcaucaucgCGGAAGCCuGCGGc -3'
miRNA:   3'- gcGCCGGCuUUGaa------GCCUUCGG-CGCU- -5'
24549 5' -56.4 NC_005264.1 + 33879 0.66 0.922629
Target:  5'- aCGCGGCuCGGAGCgaugcgCGuuAGCCaCGAu -3'
miRNA:   3'- -GCGCCG-GCUUUGaa----GCcuUCGGcGCU- -5'
24549 5' -56.4 NC_005264.1 + 34987 0.67 0.857101
Target:  5'- uCGCGcGCCGGguucuaGACcgcCGGccGCCGCGGa -3'
miRNA:   3'- -GCGC-CGGCU------UUGaa-GCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 36512 0.71 0.694157
Target:  5'- gCGCGGCCucGACgaggCGGGcgcaggagccaucGGCCGCGc -3'
miRNA:   3'- -GCGCCGGcuUUGaa--GCCU-------------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 36715 0.75 0.459536
Target:  5'- gCGCGGCCGAuGGCUccugcgcccgccUCGucGAGGCCGCGc -3'
miRNA:   3'- -GCGCCGGCU-UUGA------------AGC--CUUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 37646 0.68 0.833379
Target:  5'- aCGUGGCgGAGaugaagGCUUCGGuuGCCgGCa- -3'
miRNA:   3'- -GCGCCGgCUU------UGAAGCCuuCGG-CGcu -5'
24549 5' -56.4 NC_005264.1 + 38582 0.69 0.796644
Target:  5'- cCGCGGCCucgaGAucuugucuuucgagAGCgaggugCGGAAGCgGCGAg -3'
miRNA:   3'- -GCGCCGG----CU--------------UUGaa----GCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 40787 0.68 0.825108
Target:  5'- cCGCGgcGCCGAGAg--CGGAGccgcuuGCCGCGGg -3'
miRNA:   3'- -GCGC--CGGCUUUgaaGCCUU------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 40973 0.67 0.892621
Target:  5'- aGCGGCUcc-GCUcUCGGc-GCCGCGGa -3'
miRNA:   3'- gCGCCGGcuuUGA-AGCCuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 42733 0.69 0.76288
Target:  5'- uGcCGGCgCGaAGACgcgCGGAAGCUGCGc -3'
miRNA:   3'- gC-GCCG-GC-UUUGaa-GCCUUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 42954 0.66 0.911312
Target:  5'- gGUGGCgGAcgccGGCUagCGGGAGUCGUGc -3'
miRNA:   3'- gCGCCGgCU----UUGAa-GCCUUCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 43401 0.69 0.772176
Target:  5'- gGCGGCCuGGGCagCGaGAucgcccgccAGCCGCGAg -3'
miRNA:   3'- gCGCCGGcUUUGaaGC-CU---------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 44336 0.68 0.815813
Target:  5'- aCGCGGUugcccugCGGGugUUgGGAgaagGGCUGCGAg -3'
miRNA:   3'- -GCGCCG-------GCUUugAAgCCU----UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 44634 0.68 0.849383
Target:  5'- cCGCGGCCGAGggaguGCUgauguaGAAGCUGCc- -3'
miRNA:   3'- -GCGCCGGCUU-----UGAagc---CUUCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.