miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 46053 0.72 0.634976
Target:  5'- gGCGGCCGAGACUaCuauGGCgGCGGa -3'
miRNA:   3'- gCGCCGGCUUUGAaGccuUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 52906 0.66 0.917086
Target:  5'- aGgGGCCGAGAgccgccgcgcUUUUGGGggcgGGCgGCGAa -3'
miRNA:   3'- gCgCCGGCUUU----------GAAGCCU----UCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 55180 0.69 0.799302
Target:  5'- gCGCGGCUGAAGg--CGGcgaCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUUUgaaGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 57996 0.67 0.877643
Target:  5'- gGCGGCCGugGCUcagcggccccggCGGAcaGGCCGUc- -3'
miRNA:   3'- gCGCCGGCuuUGAa-----------GCCU--UCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 58183 0.68 0.825108
Target:  5'- cCGgGGCCGcuGAGCcaCGGccGCCGCGc -3'
miRNA:   3'- -GCgCCGGC--UUUGaaGCCuuCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 59113 0.66 0.917086
Target:  5'- gGCGGCCGccGCcgCuGAuGCCGCGc -3'
miRNA:   3'- gCGCCGGCuuUGaaGcCUuCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 59304 0.67 0.871939
Target:  5'- gGCGGCgCGGcaucAGCggCGGcGGCCGCc- -3'
miRNA:   3'- gCGCCG-GCU----UUGaaGCCuUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 59988 0.7 0.743959
Target:  5'- gGUGGCCGcGAGCgagaCGGccgcguGGCCGCGGc -3'
miRNA:   3'- gCGCCGGC-UUUGaa--GCCu-----UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 60176 0.7 0.714888
Target:  5'- aCGCGGCCGucucGCUcgCGGccaccGCCGCGu -3'
miRNA:   3'- -GCGCCGGCuu--UGAa-GCCuu---CGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 60784 0.66 0.917086
Target:  5'- cCGCGGCauacgagaaGggGC-UCGaGAAcgccGCCGCGGu -3'
miRNA:   3'- -GCGCCGg--------CuuUGaAGC-CUU----CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61197 0.71 0.675207
Target:  5'- cCGCcuGGCCGAAGCcgaGGcagagaacgAGGCCGCGAu -3'
miRNA:   3'- -GCG--CCGGCUUUGaagCC---------UUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61358 0.66 0.905308
Target:  5'- cCGCauGGCCGucaAAGCgUCGG-GGUCGCGGu -3'
miRNA:   3'- -GCG--CCGGC---UUUGaAGCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61569 0.66 0.905308
Target:  5'- aGCGcCUGGAACg--GGGAGaCCGCGAc -3'
miRNA:   3'- gCGCcGGCUUUGaagCCUUC-GGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 61611 0.67 0.871217
Target:  5'- aGCgGGCCgccgaaagcauacGAGACc-CGGAAGCgGCGAa -3'
miRNA:   3'- gCG-CCGG-------------CUUUGaaGCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 62229 0.69 0.78135
Target:  5'- cCGCGGCC---GCUUCGG-GGUCGuCGGu -3'
miRNA:   3'- -GCGCCGGcuuUGAAGCCuUCGGC-GCU- -5'
24549 5' -56.4 NC_005264.1 + 62891 0.71 0.655127
Target:  5'- uCGCGGCCGAuACgcaGGuAGCaCGCGu -3'
miRNA:   3'- -GCGCCGGCUuUGaagCCuUCG-GCGCu -5'
24549 5' -56.4 NC_005264.1 + 63226 0.72 0.614816
Target:  5'- aGCGGCCGAGGCgaUGGucGCCGa-- -3'
miRNA:   3'- gCGCCGGCUUUGaaGCCuuCGGCgcu -5'
24549 5' -56.4 NC_005264.1 + 63639 0.72 0.624893
Target:  5'- aGCGGCCG------CGGAGGCCuGCGAg -3'
miRNA:   3'- gCGCCGGCuuugaaGCCUUCGG-CGCU- -5'
24549 5' -56.4 NC_005264.1 + 66217 0.7 0.734352
Target:  5'- cCGCGGCCagcGAagGACUUgGcGAGCUGCGGg -3'
miRNA:   3'- -GCGCCGG---CU--UUGAAgCcUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 67055 0.69 0.798417
Target:  5'- gGCGGCgGAAGCgccUGGAAcgaguacucgcacGCCGCGu -3'
miRNA:   3'- gCGCCGgCUUUGaa-GCCUU-------------CGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.