miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 160621 0.72 0.613809
Target:  5'- gCGcCGGCCugccuagGAAGaaagCGGAGGCCGCGGa -3'
miRNA:   3'- -GC-GCCGG-------CUUUgaa-GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 159338 0.67 0.885943
Target:  5'- gGCGG-CGAGACga-GGAGGaCgGCGAu -3'
miRNA:   3'- gCGCCgGCUUUGaagCCUUC-GgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 159218 0.69 0.799302
Target:  5'- gGCGGuCCGcGAgUUCGGGcccgggcggGGCCGCa- -3'
miRNA:   3'- gCGCC-GGCuUUgAAGCCU---------UCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 158715 0.66 0.916519
Target:  5'- aGCGGCCGuguuuggcagaggGGACacccUCGGccccgucguGCCGCGAc -3'
miRNA:   3'- gCGCCGGC-------------UUUGa---AGCCuu-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157751 0.72 0.604751
Target:  5'- uCGCGGCCG-GACggCGG-GGCgGCGGc -3'
miRNA:   3'- -GCGCCGGCuUUGaaGCCuUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157622 0.68 0.808061
Target:  5'- cCGCGGaaGAAgaGCUUCGccucGCCGCGGc -3'
miRNA:   3'- -GCGCCggCUU--UGAAGCcuu-CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 157318 0.67 0.892621
Target:  5'- gGCGGCgacguuCGuuACgccuucgCGGAGGCCGaCGAg -3'
miRNA:   3'- gCGCCG------GCuuUGaa-----GCCUUCGGC-GCU- -5'
24549 5' -56.4 NC_005264.1 + 157194 0.68 0.825108
Target:  5'- gGUGGCCGccAC-UCGccuGGCCGCGGu -3'
miRNA:   3'- gCGCCGGCuuUGaAGCcu-UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156608 0.66 0.905308
Target:  5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3'
miRNA:   3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156487 0.67 0.857101
Target:  5'- gGCGGCagGggGCUUCGGcAGgaGCGc -3'
miRNA:   3'- gCGCCGg-CuuUGAAGCCuUCggCGCu -5'
24549 5' -56.4 NC_005264.1 + 156228 0.66 0.924781
Target:  5'- gGCGGCUcagaggggacggucaGGGugUUgcCGGAGGCgGCGGc -3'
miRNA:   3'- gCGCCGG---------------CUUugAA--GCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 156181 0.69 0.775861
Target:  5'- gGCGccaggaucucuGCCGGAGCUUcCGGAcaugugcccccgcguGGCCGUGGg -3'
miRNA:   3'- gCGC-----------CGGCUUUGAA-GCCU---------------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 155347 0.67 0.879048
Target:  5'- uCGCuGCCGuagagGAACgaaaGGAGGCCGCa- -3'
miRNA:   3'- -GCGcCGGC-----UUUGaag-CCUUCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 154958 0.67 0.885943
Target:  5'- uCGCGGCCGcag--UCGGGcacgGGCgGCGu -3'
miRNA:   3'- -GCGCCGGCuuugaAGCCU----UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 154785 0.73 0.56873
Target:  5'- uGCGGCCGcGACgugggugaagaggCGGAGGgCGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGaa-----------GCCUUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154614 0.7 0.724659
Target:  5'- aGCuGCUGcgGCUUCGGccgauGGCCGCGu -3'
miRNA:   3'- gCGcCGGCuuUGAAGCCu----UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 153927 0.71 0.66518
Target:  5'- uGgGGCCGAAuauggguCUUCGGugaCCGCGAu -3'
miRNA:   3'- gCgCCGGCUUu------GAAGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 153212 0.69 0.772176
Target:  5'- aCGCGGCCGGcuACaUgGGccGCCGCa- -3'
miRNA:   3'- -GCGCCGGCUu-UGaAgCCuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 153142 0.67 0.857101
Target:  5'- aGCGGCgCGAAACagCGucGAGgCGCGAg -3'
miRNA:   3'- gCGCCG-GCUUUGaaGCc-UUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 152974 0.66 0.898441
Target:  5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3'
miRNA:   3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.