miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 149455 0.75 0.477954
Target:  5'- uGCGGCgGAGGaggUCucggGGGAGCCGCGGg -3'
miRNA:   3'- gCGCCGgCUUUga-AG----CCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 149414 0.71 0.655127
Target:  5'- uCGCGGUCGGGACgcgggCaGggGCgGCGGu -3'
miRNA:   3'- -GCGCCGGCUUUGaa---GcCuuCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 147736 0.69 0.78135
Target:  5'- gGCGGCC---ACUUCGc--GCCGCGGg -3'
miRNA:   3'- gCGCCGGcuuUGAAGCcuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 147446 0.72 0.594706
Target:  5'- uCGUGGCC-AAGCUUgCGGGcgcAGCUGCGGc -3'
miRNA:   3'- -GCGCCGGcUUUGAA-GCCU---UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 145070 0.67 0.864622
Target:  5'- aCGUGGUCGAAcugUCGGAAcUCGUGAa -3'
miRNA:   3'- -GCGCCGGCUUugaAGCCUUcGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 141652 0.69 0.799302
Target:  5'- uGCGGCCGAcgaugucGCUacaUCGGA-GCUGgGAu -3'
miRNA:   3'- gCGCCGGCUu------UGA---AGCCUuCGGCgCU- -5'
24549 5' -56.4 NC_005264.1 + 138996 0.71 0.685199
Target:  5'- uCGUGGCUacaGAcAGCgauagCGGGAGCUGCGAg -3'
miRNA:   3'- -GCGCCGG---CU-UUGaa---GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 138460 0.67 0.885943
Target:  5'- uCGCcGCCGG------GGGAGCCGCGAa -3'
miRNA:   3'- -GCGcCGGCUuugaagCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 137964 0.69 0.78135
Target:  5'- uCGCGGCCGcGAaaaaaGAAGCCGUGGc -3'
miRNA:   3'- -GCGCCGGCuUUgaagcCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 137516 0.67 0.892621
Target:  5'- gGgGGCCGGcaacuacgacGACUUCgaGGAAGaCCGCu- -3'
miRNA:   3'- gCgCCGGCU----------UUGAAG--CCUUC-GGCGcu -5'
24549 5' -56.4 NC_005264.1 + 137424 0.67 0.892621
Target:  5'- uGCuuGGCCGAGuACUUCGGccuGGCgGUGc -3'
miRNA:   3'- gCG--CCGGCUU-UGAAGCCu--UCGgCGCu -5'
24549 5' -56.4 NC_005264.1 + 136797 0.67 0.864622
Target:  5'- gCGUGGCCGGgcggacaaAGCUggCGGAcGCUugGCGAu -3'
miRNA:   3'- -GCGCCGGCU--------UUGAa-GCCUuCGG--CGCU- -5'
24549 5' -56.4 NC_005264.1 + 136541 0.71 0.66518
Target:  5'- aCGCGGaCGAAGacgCGGGAGCCgaucGCGAu -3'
miRNA:   3'- -GCGCCgGCUUUgaaGCCUUCGG----CGCU- -5'
24549 5' -56.4 NC_005264.1 + 136036 0.68 0.807192
Target:  5'- gCGCGGCCc--ACUUCuccucguGGAAGcCCGCGu -3'
miRNA:   3'- -GCGCCGGcuuUGAAG-------CCUUC-GGCGCu -5'
24549 5' -56.4 NC_005264.1 + 133789 0.66 0.905308
Target:  5'- aGCGGUCGAGgagcACagCGGAGaCUGCGGc -3'
miRNA:   3'- gCGCCGGCUU----UGaaGCCUUcGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 133391 0.67 0.871939
Target:  5'- gCGCGGacgaaCGAGGCccgcagUCGGuccGCCGCGu -3'
miRNA:   3'- -GCGCCg----GCUUUGa-----AGCCuu-CGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 132870 0.66 0.922629
Target:  5'- aGCGGCCaGGGACg-CGGAcauuggcauGCUGUGAg -3'
miRNA:   3'- gCGCCGG-CUUUGaaGCCUu--------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 132639 0.71 0.655127
Target:  5'- uCGCGGUCGGGACgcgggCaGggGCgGCGGu -3'
miRNA:   3'- -GCGCCGGCUUUGaa---GcCuuCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 132598 0.75 0.477954
Target:  5'- uGCGGCgGAGGaggUCucggGGGAGCCGCGGg -3'
miRNA:   3'- gCGCCGgCUUUga-AG----CCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 129079 0.66 0.898441
Target:  5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3'
miRNA:   3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.