miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 5191 1.09 0.003184
Target:  5'- uCGCGGCCGAAACUUCGGAAGCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUUUGAAGCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 21577 0.7 0.713907
Target:  5'- gGC-GCCGAGACcgUGGAAaggguguGCCGCGAa -3'
miRNA:   3'- gCGcCGGCUUUGaaGCCUU-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 107220 0.7 0.714888
Target:  5'- gCGCGGuuGGca-UUCGGcgccAGCCGCGGc -3'
miRNA:   3'- -GCGCCggCUuugAAGCCu---UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 125824 0.66 0.924781
Target:  5'- gGCGGCUcagaggggacggucaGGGugUUgcCGGAGGCgGCGGc -3'
miRNA:   3'- gCGCCGG---------------CUUugAA--GCCUUCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154785 0.73 0.56873
Target:  5'- uGCGGCCGcGACgugggugaagaggCGGAGGgCGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGaa-----------GCCUUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 113036 0.73 0.574703
Target:  5'- cCGCGGCCGcGACU----GGGCCGCGGc -3'
miRNA:   3'- -GCGCCGGCuUUGAagccUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 121432 0.72 0.613809
Target:  5'- gCGcCGGCCugccuagGAAGaaagCGGAGGCCGCGGa -3'
miRNA:   3'- -GC-GCCGG-------CUUUgaa-GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 63639 0.72 0.624893
Target:  5'- aGCGGCCG------CGGAGGCCuGCGAg -3'
miRNA:   3'- gCGCCGGCuuugaaGCCUUCGG-CGCU- -5'
24549 5' -56.4 NC_005264.1 + 128126 0.71 0.66518
Target:  5'- uGgGGCCGAAuauggguCUUCGGugaCCGCGAu -3'
miRNA:   3'- gCgCCGGCUUu------GAAGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 18039 0.71 0.69515
Target:  5'- uGCGuGCCGAcGCgaagCGGcggcGCCGCGAg -3'
miRNA:   3'- gCGC-CGGCUuUGaa--GCCuu--CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 110585 0.71 0.675207
Target:  5'- cCGUGGCCGGGugaguaggCGGggGCCcCGAg -3'
miRNA:   3'- -GCGCCGGCUUugaa----GCCuuCGGcGCU- -5'
24549 5' -56.4 NC_005264.1 + 132639 0.71 0.655127
Target:  5'- uCGCGGUCGGGACgcgggCaGggGCgGCGGu -3'
miRNA:   3'- -GCGCCGGCUUUGaa---GcCuuCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 71816 0.81 0.225836
Target:  5'- aGCGGCCGAAGCcgccCGcGggGUCGCGAa -3'
miRNA:   3'- gCGCCGGCUUUGaa--GC-CuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 138996 0.71 0.685199
Target:  5'- uCGUGGCUacaGAcAGCgauagCGGGAGCUGCGAg -3'
miRNA:   3'- -GCGCCGG---CU-UUGaa---GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 75301 0.78 0.327578
Target:  5'- uGCGGaCGAcuCcUCGGAGGCCGCGGg -3'
miRNA:   3'- gCGCCgGCUuuGaAGCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 25340 0.71 0.645057
Target:  5'- gGCGGCCG-GACgagUUGGggGuaGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGa--AGCCuuCggCGCU- -5'
24549 5' -56.4 NC_005264.1 + 36512 0.71 0.694157
Target:  5'- gCGCGGCCucGACgaggCGGGcgcaggagccaucGGCCGCGc -3'
miRNA:   3'- -GCGCCGGcuUUGaa--GCCU-------------UCGGCGCu -5'
24549 5' -56.4 NC_005264.1 + 92691 0.7 0.713907
Target:  5'- aCGCGGCCGccuccugGAGCUUauugccgcacgCGGGAGUaCGCGGc -3'
miRNA:   3'- -GCGCCGGC-------UUUGAA-----------GCCUUCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 149455 0.75 0.477954
Target:  5'- uGCGGCgGAGGaggUCucggGGGAGCCGCGGg -3'
miRNA:   3'- gCGCCGgCUUUga-AG----CCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 124302 0.72 0.604751
Target:  5'- uCGCGGCCG-GACggCGG-GGCgGCGGc -3'
miRNA:   3'- -GCGCCGGCuUUGaaGCCuUCGgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.