miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 5' -56.4 NC_005264.1 + 66217 0.7 0.734352
Target:  5'- cCGCGGCCagcGAagGACUUgGcGAGCUGCGGg -3'
miRNA:   3'- -GCGCCGG---CU--UUGAAgCcUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 107220 0.7 0.714888
Target:  5'- gCGCGGuuGGca-UUCGGcgccAGCCGCGGc -3'
miRNA:   3'- -GCGCCggCUuugAAGCCu---UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 132639 0.71 0.655127
Target:  5'- uCGCGGUCGGGACgcgggCaGggGCgGCGGu -3'
miRNA:   3'- -GCGCCGGCUUUGaa---GcCuuCGgCGCU- -5'
24549 5' -56.4 NC_005264.1 + 149455 0.75 0.477954
Target:  5'- uGCGGCgGAGGaggUCucggGGGAGCCGCGGg -3'
miRNA:   3'- gCGCCGgCUUUga-AG----CCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 106423 0.69 0.802823
Target:  5'- cCGCGGgcucaCGAAgauccugcacgagcgGCUUCGGAGGCgCGCu- -3'
miRNA:   3'- -GCGCCg----GCUU---------------UGAAGCCUUCG-GCGcu -5'
24549 5' -56.4 NC_005264.1 + 156181 0.69 0.775861
Target:  5'- gGCGccaggaucucuGCCGGAGCUUcCGGAcaugugcccccgcguGGCCGUGGg -3'
miRNA:   3'- gCGC-----------CGGCUUUGAA-GCCU---------------UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 21577 0.7 0.713907
Target:  5'- gGC-GCCGAGACcgUGGAAaggguguGCCGCGAa -3'
miRNA:   3'- gCGcCGGCUUUGaaGCCUU-------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 75301 0.78 0.327578
Target:  5'- uGCGGaCGAcuCcUCGGAGGCCGCGGg -3'
miRNA:   3'- gCGCCgGCUuuGaAGCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 128840 0.69 0.772176
Target:  5'- aCGCGGCCGGcuACaUgGGccGCCGCa- -3'
miRNA:   3'- -GCGCCGGCUu-UGaAgCCuuCGGCGcu -5'
24549 5' -56.4 NC_005264.1 + 71816 0.81 0.225836
Target:  5'- aGCGGCCGAAGCcgccCGcGggGUCGCGAa -3'
miRNA:   3'- gCGCCGGCUUUGaa--GC-CuuCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 92691 0.7 0.713907
Target:  5'- aCGCGGCCGccuccugGAGCUUauugccgcacgCGGGAGUaCGCGGc -3'
miRNA:   3'- -GCGCCGGC-------UUUGAA-----------GCCUUCG-GCGCU- -5'
24549 5' -56.4 NC_005264.1 + 59988 0.7 0.743959
Target:  5'- gGUGGCCGcGAGCgagaCGGccgcguGGCCGCGGc -3'
miRNA:   3'- gCGCCGGC-UUUGaa--GCCu-----UCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 138996 0.71 0.685199
Target:  5'- uCGUGGCUacaGAcAGCgauagCGGGAGCUGCGAg -3'
miRNA:   3'- -GCGCCGG---CU-UUGaa---GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 128126 0.71 0.66518
Target:  5'- uGgGGCCGAAuauggguCUUCGGugaCCGCGAu -3'
miRNA:   3'- gCgCCGGCUUu------GAAGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 121432 0.72 0.613809
Target:  5'- gCGcCGGCCugccuagGAAGaaagCGGAGGCCGCGGa -3'
miRNA:   3'- -GC-GCCGG-------CUUUgaa-GCCUUCGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 154785 0.73 0.56873
Target:  5'- uGCGGCCGcGACgugggugaagaggCGGAGGgCGCGGu -3'
miRNA:   3'- gCGCCGGCuUUGaa-----------GCCUUCgGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 40787 0.68 0.825108
Target:  5'- cCGCGgcGCCGAGAg--CGGAGccgcuuGCCGCGGg -3'
miRNA:   3'- -GCGC--CGGCUUUgaaGCCUU------CGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 136036 0.68 0.807192
Target:  5'- gCGCGGCCc--ACUUCuccucguGGAAGcCCGCGu -3'
miRNA:   3'- -GCGCCGGcuuUGAAG-------CCUUC-GGCGCu -5'
24549 5' -56.4 NC_005264.1 + 55180 0.69 0.799302
Target:  5'- gCGCGGCUGAAGg--CGGcgaCCGCGAa -3'
miRNA:   3'- -GCGCCGGCUUUgaaGCCuucGGCGCU- -5'
24549 5' -56.4 NC_005264.1 + 62229 0.69 0.78135
Target:  5'- cCGCGGCC---GCUUCGG-GGUCGuCGGu -3'
miRNA:   3'- -GCGCCGGcuuUGAAGCCuUCGGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.