Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 122834 | 0.69 | 0.799302 |
Target: 5'- gGCGGuCCGcGAgUUCGGGcccgggcggGGCCGCa- -3' miRNA: 3'- gCGCC-GGCuUUgAAGCCU---------UCGGCGcu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 21577 | 0.7 | 0.713907 |
Target: 5'- gGC-GCCGAGACcgUGGAAaggguguGCCGCGAa -3' miRNA: 3'- gCGcCGGCUUUGaaGCCUU-------CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 75301 | 0.78 | 0.327578 |
Target: 5'- uGCGGaCGAcuCcUCGGAGGCCGCGGg -3' miRNA: 3'- gCGCCgGCUuuGaAGCCUUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 141652 | 0.69 | 0.799302 |
Target: 5'- uGCGGCCGAcgaugucGCUacaUCGGA-GCUGgGAu -3' miRNA: 3'- gCGCCGGCUu------UGA---AGCCUuCGGCgCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 71816 | 0.81 | 0.225836 |
Target: 5'- aGCGGCCGAAGCcgccCGcGggGUCGCGAa -3' miRNA: 3'- gCGCCGGCUUUGaa--GC-CuuCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 17684 | 0.67 | 0.885943 |
Target: 5'- gCGCaGCCGAGGCcgCGGcGGCuCGUGu -3' miRNA: 3'- -GCGcCGGCUUUGaaGCCuUCG-GCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 154785 | 0.73 | 0.56873 |
Target: 5'- uGCGGCCGcGACgugggugaagaggCGGAGGgCGCGGu -3' miRNA: 3'- gCGCCGGCuUUGaa-----------GCCUUCgGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 145070 | 0.67 | 0.864622 |
Target: 5'- aCGUGGUCGAAcugUCGGAAcUCGUGAa -3' miRNA: 3'- -GCGCCGGCUUugaAGCCUUcGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 5150 | 0.67 | 0.862387 |
Target: 5'- gCGCGGCCgcgccgcaucguccGAAGCcuaUUCGGAGGCCc--- -3' miRNA: 3'- -GCGCCGG--------------CUUUG---AAGCCUUCGGcgcu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 82196 | 0.67 | 0.857101 |
Target: 5'- aGCGGCCGug---UCGu-GGCCGCGc -3' miRNA: 3'- gCGCCGGCuuugaAGCcuUCGGCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 68580 | 0.68 | 0.84466 |
Target: 5'- uGCGGCCaGAACUggcaccuugccauuuUCGuGuGGCCGCGu -3' miRNA: 3'- gCGCCGGcUUUGA---------------AGC-CuUCGGCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 40787 | 0.68 | 0.825108 |
Target: 5'- cCGCGgcGCCGAGAg--CGGAGccgcuuGCCGCGGg -3' miRNA: 3'- -GCGC--CGGCUUUgaaGCCUU------CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 136036 | 0.68 | 0.807192 |
Target: 5'- gCGCGGCCc--ACUUCuccucguGGAAGcCCGCGu -3' miRNA: 3'- -GCGCCGGcuuUGAAG-------CCUUC-GGCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 137964 | 0.69 | 0.78135 |
Target: 5'- uCGCGGCCGcGAaaaaaGAAGCCGUGGc -3' miRNA: 3'- -GCGCCGGCuUUgaagcCUUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 128840 | 0.69 | 0.772176 |
Target: 5'- aCGCGGCCGGcuACaUgGGccGCCGCa- -3' miRNA: 3'- -GCGCCGGCUu-UGaAgCCuuCGGCGcu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 66217 | 0.7 | 0.734352 |
Target: 5'- cCGCGGCCagcGAagGACUUgGcGAGCUGCGGg -3' miRNA: 3'- -GCGCCGG---CU--UUGAAgCcUUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 107220 | 0.7 | 0.714888 |
Target: 5'- gCGCGGuuGGca-UUCGGcgccAGCCGCGGc -3' miRNA: 3'- -GCGCCggCUuugAAGCCu---UCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 138996 | 0.71 | 0.685199 |
Target: 5'- uCGUGGCUacaGAcAGCgauagCGGGAGCUGCGAg -3' miRNA: 3'- -GCGCCGG---CU-UUGaa---GCCUUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 128126 | 0.71 | 0.66518 |
Target: 5'- uGgGGCCGAAuauggguCUUCGGugaCCGCGAu -3' miRNA: 3'- gCgCCGGCUUu------GAAGCCuucGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 121432 | 0.72 | 0.613809 |
Target: 5'- gCGcCGGCCugccuagGAAGaaagCGGAGGCCGCGGa -3' miRNA: 3'- -GC-GCCGG-------CUUUgaa-GCCUUCGGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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