Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24549 | 5' | -56.4 | NC_005264.1 | + | 109901 | 0.67 | 0.879048 |
Target: 5'- gGgGGCCGAGGaggcCGGGcaaucuGCCGCGGc -3' miRNA: 3'- gCgCCGGCUUUgaa-GCCUu-----CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 133789 | 0.66 | 0.905308 |
Target: 5'- aGCGGUCGAGgagcACagCGGAGaCUGCGGc -3' miRNA: 3'- gCGCCGGCUU----UGaaGCCUUcGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 129079 | 0.66 | 0.898441 |
Target: 5'- gGCGcGCCGGGACcgCGcccgauaGggGCCGCu- -3' miRNA: 3'- gCGC-CGGCUUUGaaGC-------CuuCGGCGcu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 109818 | 0.67 | 0.892621 |
Target: 5'- aCGUGGCCGAggUagUGGAcgcguaucuCCGCGAa -3' miRNA: 3'- -GCGCCGGCUuuGaaGCCUuc-------GGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 124735 | 0.67 | 0.892621 |
Target: 5'- gGCGGCgacguuCGuuACgccuucgCGGAGGCCGaCGAg -3' miRNA: 3'- gCGCCG------GCuuUGaa-----GCCUUCGGC-GCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 40973 | 0.67 | 0.892621 |
Target: 5'- aGCGGCUcc-GCUcUCGGc-GCCGCGGa -3' miRNA: 3'- gCGCCGGcuuUGA-AGCCuuCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 154958 | 0.67 | 0.885943 |
Target: 5'- uCGCGGCCGcag--UCGGGcacgGGCgGCGu -3' miRNA: 3'- -GCGCCGGCuuugaAGCCU----UCGgCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 8907 | 0.67 | 0.885943 |
Target: 5'- gGCGaGCCGAAACggCGGccacGCgCGCGc -3' miRNA: 3'- gCGC-CGGCUUUGaaGCCuu--CG-GCGCu -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 159338 | 0.67 | 0.885943 |
Target: 5'- gGCGG-CGAGACga-GGAGGaCgGCGAu -3' miRNA: 3'- gCGCCgGCUUUGaagCCUUC-GgCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 125445 | 0.66 | 0.905308 |
Target: 5'- gGCGGCaagu-CUcgCGGcGGCCGCGGc -3' miRNA: 3'- gCGCCGgcuuuGAa-GCCuUCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 61569 | 0.66 | 0.905308 |
Target: 5'- aGCGcCUGGAACg--GGGAGaCCGCGAc -3' miRNA: 3'- gCGCcGGCUUUGaagCCUUC-GGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 93272 | 0.66 | 0.911312 |
Target: 5'- gGCGaGCUGAGAagccgaGGucGCCGCGGc -3' miRNA: 3'- gCGC-CGGCUUUgaag--CCuuCGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 33879 | 0.66 | 0.922629 |
Target: 5'- aCGCGGCuCGGAGCgaugcgCGuuAGCCaCGAu -3' miRNA: 3'- -GCGCCG-GCUUUGaa----GCcuUCGGcGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 68092 | 0.66 | 0.922629 |
Target: 5'- uGCGGCCGuuaucuACgcgUCGGugguGGGCCucGCGGc -3' miRNA: 3'- gCGCCGGCuu----UGa--AGCC----UUCGG--CGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 60784 | 0.66 | 0.917086 |
Target: 5'- cCGCGGCauacgagaaGggGC-UCGaGAAcgccGCCGCGGu -3' miRNA: 3'- -GCGCCGg--------CuuUGaAGC-CUU----CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 52906 | 0.66 | 0.917086 |
Target: 5'- aGgGGCCGAGAgccgccgcgcUUUUGGGggcgGGCgGCGAa -3' miRNA: 3'- gCgCCGGCUUU----------GAAGCCU----UCGgCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 123337 | 0.66 | 0.916519 |
Target: 5'- aGCGGCCGuguuuggcagaggGGACacccUCGGccccgucguGCCGCGAc -3' miRNA: 3'- gCGCCGGC-------------UUUGa---AGCCuu-------CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 28044 | 0.66 | 0.911312 |
Target: 5'- gGCGGCgGcgcAUUgggCGGAugccGCCGCGAc -3' miRNA: 3'- gCGCCGgCuu-UGAa--GCCUu---CGGCGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 71998 | 0.66 | 0.911312 |
Target: 5'- cCGCGGgCG--GCUUCGGccGCUauGCGGa -3' miRNA: 3'- -GCGCCgGCuuUGAAGCCuuCGG--CGCU- -5' |
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24549 | 5' | -56.4 | NC_005264.1 | + | 42954 | 0.66 | 0.911312 |
Target: 5'- gGUGGCgGAcgccGGCUagCGGGAGUCGUGc -3' miRNA: 3'- gCGCCGgCU----UUGAa-GCCUUCGGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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