miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24550 5' -56.5 NC_005264.1 + 131246 0.66 0.915199
Target:  5'- uCGCG-GGCGCUucgcCUAaggGCgGCGGUCg -3'
miRNA:   3'- -GCGCuCCGCGAua--GAU---UGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 156821 0.66 0.914623
Target:  5'- uGCGAGaCGCguccUUUGaccccccGCCGCGGCCg -3'
miRNA:   3'- gCGCUCcGCGau--AGAU-------UGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 125232 0.66 0.914623
Target:  5'- uGCGAGaCGCguccUUUGaccccccGCCGCGGCCg -3'
miRNA:   3'- gCGCUCcGCGau--AGAU-------UGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 96349 0.66 0.913465
Target:  5'- gCGCGccGCGCagcccgccaagcauUgaGUCUGGCCGCGGCg- -3'
miRNA:   3'- -GCGCucCGCG--------------A--UAGAUUGGUGCCGgg -5'
24550 5' -56.5 NC_005264.1 + 42478 0.66 0.911711
Target:  5'- aGCGAacauGGCGCUgagGUCUGuguCCAgcuucuguagcacugUGGCCUg -3'
miRNA:   3'- gCGCU----CCGCGA---UAGAUu--GGU---------------GCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 12641 0.66 0.90934
Target:  5'- cCGCGAGGCcgccaaugugGCUAUUaAGgC-CGGCCg -3'
miRNA:   3'- -GCGCUCCG----------CGAUAGaUUgGuGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 142686 0.66 0.90934
Target:  5'- cCGCGAucuugGGCGCcggcggCgcGCCACGccuGCCCg -3'
miRNA:   3'- -GCGCU-----CCGCGaua---GauUGGUGC---CGGG- -5'
24550 5' -56.5 NC_005264.1 + 125901 0.66 0.90934
Target:  5'- gGCGAGGCgGCcGUCUcGGCCucgcugcUGGCgCCa -3'
miRNA:   3'- gCGCUCCG-CGaUAGA-UUGGu------GCCG-GG- -5'
24550 5' -56.5 NC_005264.1 + 31209 0.66 0.90934
Target:  5'- -cCGAGGCGUgaccAUCUGuucuucuCCGCGcgcGCCCa -3'
miRNA:   3'- gcGCUCCGCGa---UAGAUu------GGUGC---CGGG- -5'
24550 5' -56.5 NC_005264.1 + 79593 0.66 0.90934
Target:  5'- cCGCGccaGCGC-AUC-AGCgGCGGCCUa -3'
miRNA:   3'- -GCGCuc-CGCGaUAGaUUGgUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 156152 0.66 0.90934
Target:  5'- gGCGAGGCgGCcGUCUcGGCCucgcugcUGGCgCCa -3'
miRNA:   3'- gCGCUCCG-CGaUAGA-UUGGu------GCCG-GG- -5'
24550 5' -56.5 NC_005264.1 + 71603 0.66 0.908742
Target:  5'- gGCaccGGCGgaGUCUGugucauaGCCACGGgCCu -3'
miRNA:   3'- gCGcu-CCGCgaUAGAU-------UGGUGCCgGG- -5'
24550 5' -56.5 NC_005264.1 + 113456 0.66 0.903252
Target:  5'- aGCGGGGUcggaccgaccccGCgGUCguGCCACGGUCg -3'
miRNA:   3'- gCGCUCCG------------CGaUAGauUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 112203 0.66 0.903252
Target:  5'- cCGCGAcuuGGaCGUUA-CUAcGCCGCGGUUCg -3'
miRNA:   3'- -GCGCU---CC-GCGAUaGAU-UGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 30427 0.66 0.903252
Target:  5'- aGCGuGGCaccGCUuugccgcgCUGGCCGCGGaaaCCu -3'
miRNA:   3'- gCGCuCCG---CGAua------GAUUGGUGCCg--GG- -5'
24550 5' -56.5 NC_005264.1 + 59208 0.66 0.903252
Target:  5'- cCGCGGGGCuugcGCUcgauucgCUGAgcgccaagcuUCugGGCCCg -3'
miRNA:   3'- -GCGCUCCG----CGAua-----GAUU----------GGugCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 35476 0.66 0.903252
Target:  5'- aGCGucGUGaacaGUCagGACCACGGCCg -3'
miRNA:   3'- gCGCucCGCga--UAGa-UUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 156228 0.66 0.902631
Target:  5'- cCGUGGGcauaauuucccacGCGCUcgCcguUGACCuguCGGCCCc -3'
miRNA:   3'- -GCGCUC-------------CGCGAuaG---AUUGGu--GCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 125825 0.66 0.902631
Target:  5'- cCGUGGGcauaauuucccacGCGCUcgCcguUGACCuguCGGCCCc -3'
miRNA:   3'- -GCGCUC-------------CGCGAuaG---AUUGGu--GCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 3604 0.66 0.89949
Target:  5'- aGUGGGGCGCgccgccuuCCAUGGUCg -3'
miRNA:   3'- gCGCUCCGCGauagauu-GGUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.