miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 3' -57.4 NC_005264.1 + 116857 0.66 0.895945
Target:  5'- -aGUUCGuGGUgUCUAggcugaucgcCGAGCACGCCg- -3'
miRNA:   3'- cgCAAGC-CCA-AGGU----------GCUCGUGCGGga -5'
24555 3' -57.4 NC_005264.1 + 106618 0.66 0.895945
Target:  5'- gGCGUaCGugaaggacGGUUUCugGGGCGCGUUCg -3'
miRNA:   3'- -CGCAaGC--------CCAAGGugCUCGUGCGGGa -5'
24555 3' -57.4 NC_005264.1 + 67421 0.66 0.889422
Target:  5'- uGCGggauUUCGGGcucUCUugGAaCAUGCCCg -3'
miRNA:   3'- -CGC----AAGCCCa--AGGugCUcGUGCGGGa -5'
24555 3' -57.4 NC_005264.1 + 76615 0.66 0.882682
Target:  5'- uGCGaacUCGGccgcCCACGAGCACGCa-- -3'
miRNA:   3'- -CGCa--AGCCcaa-GGUGCUCGUGCGgga -5'
24555 3' -57.4 NC_005264.1 + 162579 0.66 0.875729
Target:  5'- ---gUCGGGUUCUggauguCGAGCG-GCCCg -3'
miRNA:   3'- cgcaAGCCCAAGGu-----GCUCGUgCGGGa -5'
24555 3' -57.4 NC_005264.1 + 148249 0.66 0.875729
Target:  5'- cGCGUUCGcGGcggcgUUUCACGGGaCAgauuUGCCCg -3'
miRNA:   3'- -CGCAAGC-CC-----AAGGUGCUC-GU----GCGGGa -5'
24555 3' -57.4 NC_005264.1 + 119474 0.66 0.875729
Target:  5'- ---gUCGGGUUCUggauguCGAGCG-GCCCg -3'
miRNA:   3'- cgcaAGCCCAAGGu-----GCUCGUgCGGGa -5'
24555 3' -57.4 NC_005264.1 + 24777 0.66 0.868567
Target:  5'- gGCGUgucUCuGGUUCC-CGAGUuuucuUGCCCa -3'
miRNA:   3'- -CGCA---AGcCCAAGGuGCUCGu----GCGGGa -5'
24555 3' -57.4 NC_005264.1 + 123295 0.66 0.866379
Target:  5'- cCGcgCGGGaaCCGCggggcggcggcagaGAGCACGUCCUu -3'
miRNA:   3'- cGCaaGCCCaaGGUG--------------CUCGUGCGGGA- -5'
24555 3' -57.4 NC_005264.1 + 158758 0.66 0.866379
Target:  5'- cCGcgCGGGaaCCGCggggcggcggcagaGAGCACGUCCUu -3'
miRNA:   3'- cGCaaGCCCaaGGUG--------------CUCGUGCGGGA- -5'
24555 3' -57.4 NC_005264.1 + 159223 0.67 0.82982
Target:  5'- uGCGUggCGG--UCCGCGAGUucGgGCCCg -3'
miRNA:   3'- -CGCAa-GCCcaAGGUGCUCG--UgCGGGa -5'
24555 3' -57.4 NC_005264.1 + 122829 0.67 0.82982
Target:  5'- uGCGUggCGG--UCCGCGAGUucGgGCCCg -3'
miRNA:   3'- -CGCAa-GCCcaAGGUGCUCG--UgCGGGa -5'
24555 3' -57.4 NC_005264.1 + 158343 0.67 0.822363
Target:  5'- uGCG-UCGGGgcgaguggcgccgcgUCCACGAcagcaGCugGUCCa -3'
miRNA:   3'- -CGCaAGCCCa--------------AGGUGCU-----CGugCGGGa -5'
24555 3' -57.4 NC_005264.1 + 134010 0.67 0.813068
Target:  5'- uCGUUgccuggcaaUGGGUaCCAUGGGCucagGCGCCCUu -3'
miRNA:   3'- cGCAA---------GCCCAaGGUGCUCG----UGCGGGA- -5'
24555 3' -57.4 NC_005264.1 + 100302 0.67 0.813068
Target:  5'- gGCG-UCGGGguaguagUCCGCGAgaacGUACGUCUg -3'
miRNA:   3'- -CGCaAGCCCa------AGGUGCU----CGUGCGGGa -5'
24555 3' -57.4 NC_005264.1 + 92598 0.68 0.795686
Target:  5'- cGCGggCaGGUUUgAUGcGCugGCCCUg -3'
miRNA:   3'- -CGCaaGcCCAAGgUGCuCGugCGGGA- -5'
24555 3' -57.4 NC_005264.1 + 42180 0.68 0.777739
Target:  5'- aGCucUUCaGGauUUCCACGAGCGCGUCUg -3'
miRNA:   3'- -CGc-AAGcCC--AAGGUGCUCGUGCGGGa -5'
24555 3' -57.4 NC_005264.1 + 3641 0.69 0.749902
Target:  5'- uGCGgcacCGGGcgCCACGGGCgGCGgacCCCUg -3'
miRNA:   3'- -CGCaa--GCCCaaGGUGCUCG-UGC---GGGA- -5'
24555 3' -57.4 NC_005264.1 + 65808 0.69 0.721173
Target:  5'- cGCGcgCGGGUacCCACGAGC-CGCg-- -3'
miRNA:   3'- -CGCaaGCCCAa-GGUGCUCGuGCGgga -5'
24555 3' -57.4 NC_005264.1 + 47157 0.7 0.691784
Target:  5'- -aGUUUGGGUUCU-CGAGCcCGCCa- -3'
miRNA:   3'- cgCAAGCCCAAGGuGCUCGuGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.