miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 3' -57.4 NC_005264.1 + 152611 0.7 0.681881
Target:  5'- uCGUUCGGGUcacCCGCG-GCGCGuuuggaCCCUa -3'
miRNA:   3'- cGCAAGCCCAa--GGUGCuCGUGC------GGGA- -5'
24555 3' -57.4 NC_005264.1 + 129442 0.7 0.681881
Target:  5'- uCGUUCGGGUcacCCGCG-GCGCGuuuggaCCCUa -3'
miRNA:   3'- cGCAAGCCCAa--GGUGCuCGUGC------GGGA- -5'
24555 3' -57.4 NC_005264.1 + 162631 0.71 0.645964
Target:  5'- aGCGaUCGGGggCUACGAuuucgaggcucggaaGCGCGCCg- -3'
miRNA:   3'- -CGCaAGCCCaaGGUGCU---------------CGUGCGGga -5'
24555 3' -57.4 NC_005264.1 + 119422 0.71 0.645964
Target:  5'- aGCGaUCGGGggCUACGAuuucgaggcucggaaGCGCGCCg- -3'
miRNA:   3'- -CGCaAGCCCaaGGUGCU---------------CGUGCGGga -5'
24555 3' -57.4 NC_005264.1 + 21846 0.71 0.641958
Target:  5'- aGUGUUCGGG-UCCGgGAGUAUuuucaucaGCCCc -3'
miRNA:   3'- -CGCAAGCCCaAGGUgCUCGUG--------CGGGa -5'
24555 3' -57.4 NC_005264.1 + 71857 0.72 0.572078
Target:  5'- cGCGgcggCGGuGUUCCGCGAcggcacgcGgGCGCCCg -3'
miRNA:   3'- -CGCaa--GCC-CAAGGUGCU--------CgUGCGGGa -5'
24555 3' -57.4 NC_005264.1 + 43321 0.72 0.572078
Target:  5'- uCGUUCGcgaGGgcugCCGCcucgGAGCACGCCCUg -3'
miRNA:   3'- cGCAAGC---CCaa--GGUG----CUCGUGCGGGA- -5'
24555 3' -57.4 NC_005264.1 + 24499 0.75 0.388784
Target:  5'- cGCGUUCGGGcgCCuuguCGcGCACGCgCCa -3'
miRNA:   3'- -CGCAAGCCCaaGGu---GCuCGUGCG-GGa -5'
24555 3' -57.4 NC_005264.1 + 110823 0.77 0.31056
Target:  5'- aGCGUUCGGGUcugagcggggucgcUCCGCGcGCgACGUCCg -3'
miRNA:   3'- -CGCAAGCCCA--------------AGGUGCuCG-UGCGGGa -5'
24555 3' -57.4 NC_005264.1 + 67658 0.8 0.200252
Target:  5'- gGCGgcccggccUCGGGUUUCACGAGCugGCCg- -3'
miRNA:   3'- -CGCa-------AGCCCAAGGUGCUCGugCGGga -5'
24555 3' -57.4 NC_005264.1 + 11442 1.09 0.002494
Target:  5'- cGCGUUCGGGUUCCACGAGCACGCCCUu -3'
miRNA:   3'- -CGCAAGCCCAAGGUGCUCGUGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.