Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24555 | 3' | -57.4 | NC_005264.1 | + | 3641 | 0.69 | 0.749902 |
Target: 5'- uGCGgcacCGGGcgCCACGGGCgGCGgacCCCUg -3' miRNA: 3'- -CGCaa--GCCCaaGGUGCUCG-UGC---GGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 11442 | 1.09 | 0.002494 |
Target: 5'- cGCGUUCGGGUUCCACGAGCACGCCCUu -3' miRNA: 3'- -CGCAAGCCCAAGGUGCUCGUGCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 21846 | 0.71 | 0.641958 |
Target: 5'- aGUGUUCGGG-UCCGgGAGUAUuuucaucaGCCCc -3' miRNA: 3'- -CGCAAGCCCaAGGUgCUCGUG--------CGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 24499 | 0.75 | 0.388784 |
Target: 5'- cGCGUUCGGGcgCCuuguCGcGCACGCgCCa -3' miRNA: 3'- -CGCAAGCCCaaGGu---GCuCGUGCG-GGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 24777 | 0.66 | 0.868567 |
Target: 5'- gGCGUgucUCuGGUUCC-CGAGUuuucuUGCCCa -3' miRNA: 3'- -CGCA---AGcCCAAGGuGCUCGu----GCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 42180 | 0.68 | 0.777739 |
Target: 5'- aGCucUUCaGGauUUCCACGAGCGCGUCUg -3' miRNA: 3'- -CGc-AAGcCC--AAGGUGCUCGUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 43321 | 0.72 | 0.572078 |
Target: 5'- uCGUUCGcgaGGgcugCCGCcucgGAGCACGCCCUg -3' miRNA: 3'- cGCAAGC---CCaa--GGUG----CUCGUGCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 47157 | 0.7 | 0.691784 |
Target: 5'- -aGUUUGGGUUCU-CGAGCcCGCCa- -3' miRNA: 3'- cgCAAGCCCAAGGuGCUCGuGCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 65808 | 0.69 | 0.721173 |
Target: 5'- cGCGcgCGGGUacCCACGAGC-CGCg-- -3' miRNA: 3'- -CGCaaGCCCAa-GGUGCUCGuGCGgga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 67421 | 0.66 | 0.889422 |
Target: 5'- uGCGggauUUCGGGcucUCUugGAaCAUGCCCg -3' miRNA: 3'- -CGC----AAGCCCa--AGGugCUcGUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 67658 | 0.8 | 0.200252 |
Target: 5'- gGCGgcccggccUCGGGUUUCACGAGCugGCCg- -3' miRNA: 3'- -CGCa-------AGCCCAAGGUGCUCGugCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 71857 | 0.72 | 0.572078 |
Target: 5'- cGCGgcggCGGuGUUCCGCGAcggcacgcGgGCGCCCg -3' miRNA: 3'- -CGCaa--GCC-CAAGGUGCU--------CgUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 76615 | 0.66 | 0.882682 |
Target: 5'- uGCGaacUCGGccgcCCACGAGCACGCa-- -3' miRNA: 3'- -CGCa--AGCCcaa-GGUGCUCGUGCGgga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 92598 | 0.68 | 0.795686 |
Target: 5'- cGCGggCaGGUUUgAUGcGCugGCCCUg -3' miRNA: 3'- -CGCaaGcCCAAGgUGCuCGugCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 100302 | 0.67 | 0.813068 |
Target: 5'- gGCG-UCGGGguaguagUCCGCGAgaacGUACGUCUg -3' miRNA: 3'- -CGCaAGCCCa------AGGUGCU----CGUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 106618 | 0.66 | 0.895945 |
Target: 5'- gGCGUaCGugaaggacGGUUUCugGGGCGCGUUCg -3' miRNA: 3'- -CGCAaGC--------CCAAGGugCUCGUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 110823 | 0.77 | 0.31056 |
Target: 5'- aGCGUUCGGGUcugagcggggucgcUCCGCGcGCgACGUCCg -3' miRNA: 3'- -CGCAAGCCCA--------------AGGUGCuCG-UGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 116857 | 0.66 | 0.895945 |
Target: 5'- -aGUUCGuGGUgUCUAggcugaucgcCGAGCACGCCg- -3' miRNA: 3'- cgCAAGC-CCA-AGGU----------GCUCGUGCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 119422 | 0.71 | 0.645964 |
Target: 5'- aGCGaUCGGGggCUACGAuuucgaggcucggaaGCGCGCCg- -3' miRNA: 3'- -CGCaAGCCCaaGGUGCU---------------CGUGCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 119474 | 0.66 | 0.875729 |
Target: 5'- ---gUCGGGUUCUggauguCGAGCG-GCCCg -3' miRNA: 3'- cgcaAGCCCAAGGu-----GCUCGUgCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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