Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24555 | 3' | -57.4 | NC_005264.1 | + | 162631 | 0.71 | 0.645964 |
Target: 5'- aGCGaUCGGGggCUACGAuuucgaggcucggaaGCGCGCCg- -3' miRNA: 3'- -CGCaAGCCCaaGGUGCU---------------CGUGCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 162579 | 0.66 | 0.875729 |
Target: 5'- ---gUCGGGUUCUggauguCGAGCG-GCCCg -3' miRNA: 3'- cgcaAGCCCAAGGu-----GCUCGUgCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 159223 | 0.67 | 0.82982 |
Target: 5'- uGCGUggCGG--UCCGCGAGUucGgGCCCg -3' miRNA: 3'- -CGCAa-GCCcaAGGUGCUCG--UgCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 158758 | 0.66 | 0.866379 |
Target: 5'- cCGcgCGGGaaCCGCggggcggcggcagaGAGCACGUCCUu -3' miRNA: 3'- cGCaaGCCCaaGGUG--------------CUCGUGCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 158343 | 0.67 | 0.822363 |
Target: 5'- uGCG-UCGGGgcgaguggcgccgcgUCCACGAcagcaGCugGUCCa -3' miRNA: 3'- -CGCaAGCCCa--------------AGGUGCU-----CGugCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 152611 | 0.7 | 0.681881 |
Target: 5'- uCGUUCGGGUcacCCGCG-GCGCGuuuggaCCCUa -3' miRNA: 3'- cGCAAGCCCAa--GGUGCuCGUGC------GGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 148249 | 0.66 | 0.875729 |
Target: 5'- cGCGUUCGcGGcggcgUUUCACGGGaCAgauuUGCCCg -3' miRNA: 3'- -CGCAAGC-CC-----AAGGUGCUC-GU----GCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 134010 | 0.67 | 0.813068 |
Target: 5'- uCGUUgccuggcaaUGGGUaCCAUGGGCucagGCGCCCUu -3' miRNA: 3'- cGCAA---------GCCCAaGGUGCUCG----UGCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 129442 | 0.7 | 0.681881 |
Target: 5'- uCGUUCGGGUcacCCGCG-GCGCGuuuggaCCCUa -3' miRNA: 3'- cGCAAGCCCAa--GGUGCuCGUGC------GGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 123295 | 0.66 | 0.866379 |
Target: 5'- cCGcgCGGGaaCCGCggggcggcggcagaGAGCACGUCCUu -3' miRNA: 3'- cGCaaGCCCaaGGUG--------------CUCGUGCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 122829 | 0.67 | 0.82982 |
Target: 5'- uGCGUggCGG--UCCGCGAGUucGgGCCCg -3' miRNA: 3'- -CGCAa-GCCcaAGGUGCUCG--UgCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 119474 | 0.66 | 0.875729 |
Target: 5'- ---gUCGGGUUCUggauguCGAGCG-GCCCg -3' miRNA: 3'- cgcaAGCCCAAGGu-----GCUCGUgCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 119422 | 0.71 | 0.645964 |
Target: 5'- aGCGaUCGGGggCUACGAuuucgaggcucggaaGCGCGCCg- -3' miRNA: 3'- -CGCaAGCCCaaGGUGCU---------------CGUGCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 116857 | 0.66 | 0.895945 |
Target: 5'- -aGUUCGuGGUgUCUAggcugaucgcCGAGCACGCCg- -3' miRNA: 3'- cgCAAGC-CCA-AGGU----------GCUCGUGCGGga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 110823 | 0.77 | 0.31056 |
Target: 5'- aGCGUUCGGGUcugagcggggucgcUCCGCGcGCgACGUCCg -3' miRNA: 3'- -CGCAAGCCCA--------------AGGUGCuCG-UGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 106618 | 0.66 | 0.895945 |
Target: 5'- gGCGUaCGugaaggacGGUUUCugGGGCGCGUUCg -3' miRNA: 3'- -CGCAaGC--------CCAAGGugCUCGUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 100302 | 0.67 | 0.813068 |
Target: 5'- gGCG-UCGGGguaguagUCCGCGAgaacGUACGUCUg -3' miRNA: 3'- -CGCaAGCCCa------AGGUGCU----CGUGCGGGa -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 92598 | 0.68 | 0.795686 |
Target: 5'- cGCGggCaGGUUUgAUGcGCugGCCCUg -3' miRNA: 3'- -CGCaaGcCCAAGgUGCuCGugCGGGA- -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 76615 | 0.66 | 0.882682 |
Target: 5'- uGCGaacUCGGccgcCCACGAGCACGCa-- -3' miRNA: 3'- -CGCa--AGCCcaa-GGUGCUCGUGCGgga -5' |
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24555 | 3' | -57.4 | NC_005264.1 | + | 71857 | 0.72 | 0.572078 |
Target: 5'- cGCGgcggCGGuGUUCCGCGAcggcacgcGgGCGCCCg -3' miRNA: 3'- -CGCaa--GCC-CAAGGUGCU--------CgUGCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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