miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 146201 0.66 0.926456
Target:  5'- aAGAGucGCCcgaGCCCAUAACGcgcacgccguaGAGGCCc -3'
miRNA:   3'- -UCUCc-UGGa--CGGGUAUUGC-----------UUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 145016 0.66 0.926456
Target:  5'- uGGAGGAUCUaGCCCccucguCGGAGGaCGc -3'
miRNA:   3'- -UCUCCUGGA-CGGGuauu--GCUUCCgGC- -5'
24555 5' -55.8 NC_005264.1 + 10095 0.66 0.925921
Target:  5'- cGGGGGcaucgcgGCCgUGUCCGUGACGugGAGGCa- -3'
miRNA:   3'- -UCUCC-------UGG-ACGGGUAUUGC--UUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 95181 0.66 0.915308
Target:  5'- -aAGGugCcGUgCCAUAACGAagacGGGCCGc -3'
miRNA:   3'- ucUCCugGaCG-GGUAUUGCU----UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 127334 0.66 0.909377
Target:  5'- cGGGGGcACCUGCgCCGcGGCGuc-GCCGu -3'
miRNA:   3'- -UCUCC-UGGACG-GGUaUUGCuucCGGC- -5'
24555 5' -55.8 NC_005264.1 + 55096 0.66 0.909377
Target:  5'- cGGAGGcaacucgcaACUUGCCCAagccACGAGGGuUCGa -3'
miRNA:   3'- -UCUCC---------UGGACGGGUau--UGCUUCC-GGC- -5'
24555 5' -55.8 NC_005264.1 + 154719 0.66 0.909377
Target:  5'- cGGGGGcACCUGCgCCGcGGCGuc-GCCGu -3'
miRNA:   3'- -UCUCC-UGGACG-GGUaUUGCuucCGGC- -5'
24555 5' -55.8 NC_005264.1 + 104290 0.66 0.90321
Target:  5'- aGGGGGACgUcGCCCAUGucuuucaugagcGCGAugauGGGCUc -3'
miRNA:   3'- -UCUCCUGgA-CGGGUAU------------UGCU----UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 67211 0.66 0.90321
Target:  5'- cGGGGGCCUGCgCA------AGGCCGc -3'
miRNA:   3'- uCUCCUGGACGgGUauugcuUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 64871 0.66 0.90321
Target:  5'- cGAGcacGGCCUGCCCGc--CGGcAGGCCc -3'
miRNA:   3'- uCUC---CUGGACGGGUauuGCU-UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 110537 0.67 0.896811
Target:  5'- --uGGACCUGCCUGauuACGGuggAGGUCGc -3'
miRNA:   3'- ucuCCUGGACGGGUau-UGCU---UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 1722 0.67 0.896811
Target:  5'- cAGGGGGggUGCCCAUAcuaugGCGAuccuGGUCGc -3'
miRNA:   3'- -UCUCCUggACGGGUAU-----UGCUu---CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 60897 0.67 0.896811
Target:  5'- cGAGGccgcggccaacaACCUGCugaCCucuGCGGAGGCCu -3'
miRNA:   3'- uCUCC------------UGGACG---GGuauUGCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 65307 0.67 0.890182
Target:  5'- cGAGGGCUUggcGUCgCGUucacCGGAGGCCGg -3'
miRNA:   3'- uCUCCUGGA---CGG-GUAuu--GCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 69605 0.67 0.890182
Target:  5'- cGAGGGCgCcGCCCGgcgugagAACGAcAGGCUa -3'
miRNA:   3'- uCUCCUG-GaCGGGUa------UUGCU-UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 95991 0.67 0.883325
Target:  5'- cGAGGGCCucaggauaggcUacaccGCCCAccUGAgGAAGGCCa -3'
miRNA:   3'- uCUCCUGG-----------A-----CGGGU--AUUgCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 52882 0.67 0.883325
Target:  5'- --cGGuACCUG-CCAUAGC-AGGGCCGu -3'
miRNA:   3'- ucuCC-UGGACgGGUAUUGcUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 137861 0.67 0.883325
Target:  5'- cGAGGACgUGgCCAcgGAaggcaagcaucUGAGGGCCGc -3'
miRNA:   3'- uCUCCUGgACgGGUa-UU-----------GCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 150169 0.67 0.871895
Target:  5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3'
miRNA:   3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 131884 0.67 0.871895
Target:  5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3'
miRNA:   3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.