miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 11478 1.08 0.00379
Target:  5'- uAGAGGACCUGCCCAUAACGAAGGCCGc -3'
miRNA:   3'- -UCUCCUGGACGGGUAUUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 110620 0.76 0.423171
Target:  5'- cAGAGGuuUUGCCCcgGGCGAccuGGCCGa -3'
miRNA:   3'- -UCUCCugGACGGGuaUUGCUu--CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 121423 0.75 0.450124
Target:  5'- aGGAGcccggcgccGGCCUGCCUAggaagaaAGCGGAGGCCGc -3'
miRNA:   3'- -UCUC---------CUGGACGGGUa------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 160630 0.75 0.450124
Target:  5'- aGGAGcccggcgccGGCCUGCCUAggaagaaAGCGGAGGCCGc -3'
miRNA:   3'- -UCUC---------CUGGACGGGUa------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 113070 0.75 0.468608
Target:  5'- cGAGG-CCUGCCCu--ACGAAGGUaCGg -3'
miRNA:   3'- uCUCCuGGACGGGuauUGCUUCCG-GC- -5'
24555 5' -55.8 NC_005264.1 + 27149 0.74 0.497041
Target:  5'- cGAGGGCCgGCCCGUc-CGugcAGGCCGu -3'
miRNA:   3'- uCUCCUGGaCGGGUAuuGCu--UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 157756 0.73 0.576166
Target:  5'- uAGAGGACCccuCCCcgGACGGgcuGGCCGc -3'
miRNA:   3'- -UCUCCUGGac-GGGuaUUGCUu--CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 124296 0.73 0.576166
Target:  5'- uAGAGGACCccuCCCcgGACGGgcuGGCCGc -3'
miRNA:   3'- -UCUCCUGGac-GGGuaUUGCUu--CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 126889 0.72 0.616868
Target:  5'- cGAcGGACgaGCCCA---UGGAGGCCGa -3'
miRNA:   3'- uCU-CCUGgaCGGGUauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 155164 0.72 0.616868
Target:  5'- cGAcGGACgaGCCCA---UGGAGGCCGa -3'
miRNA:   3'- uCU-CCUGgaCGGGUauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 111882 0.72 0.627091
Target:  5'- --cGGGCUU-CCCAUGaACGAAGGCCa -3'
miRNA:   3'- ucuCCUGGAcGGGUAU-UGCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 22687 0.72 0.64754
Target:  5'- cGGGGGCCcagagaUGCCCGcagugauGCGAuAGGCCGa -3'
miRNA:   3'- uCUCCUGG------ACGGGUau-----UGCU-UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 95042 0.7 0.718278
Target:  5'- gGGAGGAuuugugaaggcaCCgGCUCGUuGCGggGGUCGg -3'
miRNA:   3'- -UCUCCU------------GGaCGGGUAuUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 125511 0.7 0.737961
Target:  5'- cGGGGugCgcgGCCau---CGAGGGCCGg -3'
miRNA:   3'- uCUCCugGa--CGGguauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 156542 0.7 0.737961
Target:  5'- cGGGGugCgcgGCCau---CGAGGGCCGg -3'
miRNA:   3'- uCUCCugGa--CGGguauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 69758 0.7 0.74767
Target:  5'- cAGAacuGGcCCUGCCacgaauucgGGCGGAGGCCGc -3'
miRNA:   3'- -UCU---CCuGGACGGgua------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 64676 0.7 0.757277
Target:  5'- gGGuuuGGGCCUGCC---GGCGGgcAGGCCGu -3'
miRNA:   3'- -UCu--CCUGGACGGguaUUGCU--UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 3446 0.69 0.766773
Target:  5'- cAGGGGuCCgccGCCCGUGGCGcccGGuGCCGc -3'
miRNA:   3'- -UCUCCuGGa--CGGGUAUUGCu--UC-CGGC- -5'
24555 5' -55.8 NC_005264.1 + 16442 0.69 0.766773
Target:  5'- -cGGGGCCUGCCCGcgggugugAACGu-GGUCGa -3'
miRNA:   3'- ucUCCUGGACGGGUa-------UUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 91309 0.69 0.766773
Target:  5'- -cAGGGCgaUGCCCGUAcCGGAGGCg- -3'
miRNA:   3'- ucUCCUGg-ACGGGUAUuGCUUCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.