Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24555 | 5' | -55.8 | NC_005264.1 | + | 150169 | 0.67 | 0.871895 |
Target: 5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3' miRNA: 3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 150446 | 0.67 | 0.871895 |
Target: 5'- gGGGGGACacgGCCCAcaucAGCuuucagcucucucugGAGGGCCGc -3' miRNA: 3'- -UCUCCUGga-CGGGUa---UUG---------------CUUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 19194 | 0.67 | 0.86895 |
Target: 5'- cGGcAGGuucgGCUUGCCCAUggUGugcagggagcAGGGCCGg -3' miRNA: 3'- -UC-UCC----UGGACGGGUAuuGC----------UUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 148614 | 0.67 | 0.862202 |
Target: 5'- -uGGGACCgaaGCUCAUGGCGuuguuuuccgccguGGCCGa -3' miRNA: 3'- ucUCCUGGa--CGGGUAUUGCuu------------CCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 122876 | 0.67 | 0.861442 |
Target: 5'- gAGAcGGCC-GCCCAUcgucgaGACGgcGGCCa -3' miRNA: 3'- -UCUcCUGGaCGGGUA------UUGCuuCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 159177 | 0.67 | 0.861442 |
Target: 5'- gAGAcGGCC-GCCCAUcgucgaGACGgcGGCCa -3' miRNA: 3'- -UCUcCUGGaCGGGUA------UUGCuuCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 100517 | 0.67 | 0.860679 |
Target: 5'- uGAGGACaUGCCUAUGgagacgaACGAGaaacguaaggacGGCCGa -3' miRNA: 3'- uCUCCUGgACGGGUAU-------UGCUU------------CCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 85853 | 0.68 | 0.851372 |
Target: 5'- cGGAGGGag-GCCCAUAgaugGCGugcuugugaccaccGAGGCCGu -3' miRNA: 3'- -UCUCCUggaCGGGUAU----UGC--------------UUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 94346 | 0.68 | 0.843398 |
Target: 5'- cAGGGGACgCUGCuCCAgaGAUGAacucgcaguccauuAGGCCa -3' miRNA: 3'- -UCUCCUG-GACG-GGUa-UUGCU--------------UCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 18599 | 0.68 | 0.837701 |
Target: 5'- gAGAGGgcgcGCCUGCgCCGgccggAACGguGGUCGu -3' miRNA: 3'- -UCUCC----UGGACG-GGUa----UUGCuuCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 44089 | 0.68 | 0.837701 |
Target: 5'- -uAGGaACCUGUCCucAACGAuGGCCa -3' miRNA: 3'- ucUCC-UGGACGGGuaUUGCUuCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 87808 | 0.68 | 0.829405 |
Target: 5'- cAGAGGGuuUGCCUcUGGCGc-GGCCa -3' miRNA: 3'- -UCUCCUggACGGGuAUUGCuuCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 137453 | 0.68 | 0.82093 |
Target: 5'- cAGGGGAgCUcugGCCCAUGgccaaaugaauaGCGccGGGCCGg -3' miRNA: 3'- -UCUCCUgGA---CGGGUAU------------UGCu-UCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 93785 | 0.68 | 0.812284 |
Target: 5'- cGAuGACCUGCCCG--GCGGccgcGGCCa -3' miRNA: 3'- uCUcCUGGACGGGUauUGCUu---CCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 53513 | 0.68 | 0.812284 |
Target: 5'- gGGAGGuaguGCUUGUCCAUGAugaacgcaaacuCGAAGGCgGu -3' miRNA: 3'- -UCUCC----UGGACGGGUAUU------------GCUUCCGgC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 17292 | 0.69 | 0.803474 |
Target: 5'- cGGAGGG-CUGCCCAucUAACuGAAuGGUCGc -3' miRNA: 3'- -UCUCCUgGACGGGU--AUUG-CUU-CCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 16384 | 0.69 | 0.800801 |
Target: 5'- gGGAGGGgaUGCCCGUGGCGcauuggcacucgggGAGGCa- -3' miRNA: 3'- -UCUCCUggACGGGUAUUGC--------------UUCCGgc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 88007 | 0.69 | 0.79451 |
Target: 5'- cAGAaGACCUGCCCcUggUGcccacguuccucGGGGCCGa -3' miRNA: 3'- -UCUcCUGGACGGGuAuuGC------------UUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 156117 | 0.69 | 0.790882 |
Target: 5'- aAGAGuGGCCcGCCCAagguggugggcagGACGAGGGCg- -3' miRNA: 3'- -UCUC-CUGGaCGGGUa------------UUGCUUCCGgc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 125936 | 0.69 | 0.790882 |
Target: 5'- aAGAGuGGCCcGCCCAagguggugggcagGACGAGGGCg- -3' miRNA: 3'- -UCUC-CUGGaCGGGUa------------UUGCUUCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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