miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 1722 0.67 0.896811
Target:  5'- cAGGGGGggUGCCCAUAcuaugGCGAuccuGGUCGc -3'
miRNA:   3'- -UCUCCUggACGGGUAU-----UGCUu---CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 3446 0.69 0.766773
Target:  5'- cAGGGGuCCgccGCCCGUGGCGcccGGuGCCGc -3'
miRNA:   3'- -UCUCCuGGa--CGGGUAUUGCu--UC-CGGC- -5'
24555 5' -55.8 NC_005264.1 + 8912 0.69 0.785399
Target:  5'- cGGGGGGCgaGCCgA-AACGgcGGCCa -3'
miRNA:   3'- -UCUCCUGgaCGGgUaUUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 10095 0.66 0.925921
Target:  5'- cGGGGGcaucgcgGCCgUGUCCGUGACGugGAGGCa- -3'
miRNA:   3'- -UCUCC-------UGG-ACGGGUAUUGC--UUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 11478 1.08 0.00379
Target:  5'- uAGAGGACCUGCCCAUAACGAAGGCCGc -3'
miRNA:   3'- -UCUCCUGGACGGGUAUUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 16384 0.69 0.800801
Target:  5'- gGGAGGGgaUGCCCGUGGCGcauuggcacucgggGAGGCa- -3'
miRNA:   3'- -UCUCCUggACGGGUAUUGC--------------UUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 16442 0.69 0.766773
Target:  5'- -cGGGGCCUGCCCGcgggugugAACGu-GGUCGa -3'
miRNA:   3'- ucUCCUGGACGGGUa-------UUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 17292 0.69 0.803474
Target:  5'- cGGAGGG-CUGCCCAucUAACuGAAuGGUCGc -3'
miRNA:   3'- -UCUCCUgGACGGGU--AUUG-CUU-CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 18599 0.68 0.837701
Target:  5'- gAGAGGgcgcGCCUGCgCCGgccggAACGguGGUCGu -3'
miRNA:   3'- -UCUCC----UGGACG-GGUa----UUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 19194 0.67 0.86895
Target:  5'- cGGcAGGuucgGCUUGCCCAUggUGugcagggagcAGGGCCGg -3'
miRNA:   3'- -UC-UCC----UGGACGGGUAuuGC----------UUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 22687 0.72 0.64754
Target:  5'- cGGGGGCCcagagaUGCCCGcagugauGCGAuAGGCCGa -3'
miRNA:   3'- uCUCCUGG------ACGGGUau-----UGCU-UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 27149 0.74 0.497041
Target:  5'- cGAGGGCCgGCCCGUc-CGugcAGGCCGu -3'
miRNA:   3'- uCUCCUGGaCGGGUAuuGCu--UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 44089 0.68 0.837701
Target:  5'- -uAGGaACCUGUCCucAACGAuGGCCa -3'
miRNA:   3'- ucUCC-UGGACGGGuaUUGCUuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 52882 0.67 0.883325
Target:  5'- --cGGuACCUG-CCAUAGC-AGGGCCGu -3'
miRNA:   3'- ucuCC-UGGACgGGUAUUGcUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 53513 0.68 0.812284
Target:  5'- gGGAGGuaguGCUUGUCCAUGAugaacgcaaacuCGAAGGCgGu -3'
miRNA:   3'- -UCUCC----UGGACGGGUAUU------------GCUUCCGgC- -5'
24555 5' -55.8 NC_005264.1 + 55096 0.66 0.909377
Target:  5'- cGGAGGcaacucgcaACUUGCCCAagccACGAGGGuUCGa -3'
miRNA:   3'- -UCUCC---------UGGACGGGUau--UGCUUCC-GGC- -5'
24555 5' -55.8 NC_005264.1 + 60897 0.67 0.896811
Target:  5'- cGAGGccgcggccaacaACCUGCugaCCucuGCGGAGGCCu -3'
miRNA:   3'- uCUCC------------UGGACG---GGuauUGCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 64676 0.7 0.757277
Target:  5'- gGGuuuGGGCCUGCC---GGCGGgcAGGCCGu -3'
miRNA:   3'- -UCu--CCUGGACGGguaUUGCU--UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 64871 0.66 0.90321
Target:  5'- cGAGcacGGCCUGCCCGc--CGGcAGGCCc -3'
miRNA:   3'- uCUC---CUGGACGGGUauuGCU-UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 65307 0.67 0.890182
Target:  5'- cGAGGGCUUggcGUCgCGUucacCGGAGGCCGg -3'
miRNA:   3'- uCUCCUGGA---CGG-GUAuu--GCUUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.