miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 67211 0.66 0.90321
Target:  5'- cGGGGGCCUGCgCA------AGGCCGc -3'
miRNA:   3'- uCUCCUGGACGgGUauugcuUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 69605 0.67 0.890182
Target:  5'- cGAGGGCgCcGCCCGgcgugagAACGAcAGGCUa -3'
miRNA:   3'- uCUCCUG-GaCGGGUa------UUGCU-UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 69758 0.7 0.74767
Target:  5'- cAGAacuGGcCCUGCCacgaauucgGGCGGAGGCCGc -3'
miRNA:   3'- -UCU---CCuGGACGGgua------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 85853 0.68 0.851372
Target:  5'- cGGAGGGag-GCCCAUAgaugGCGugcuugugaccaccGAGGCCGu -3'
miRNA:   3'- -UCUCCUggaCGGGUAU----UGC--------------UUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 87808 0.68 0.829405
Target:  5'- cAGAGGGuuUGCCUcUGGCGc-GGCCa -3'
miRNA:   3'- -UCUCCUggACGGGuAUUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 88007 0.69 0.79451
Target:  5'- cAGAaGACCUGCCCcUggUGcccacguuccucGGGGCCGa -3'
miRNA:   3'- -UCUcCUGGACGGGuAuuGC------------UUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 91309 0.69 0.766773
Target:  5'- -cAGGGCgaUGCCCGUAcCGGAGGCg- -3'
miRNA:   3'- ucUCCUGg-ACGGGUAUuGCUUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 93785 0.68 0.812284
Target:  5'- cGAuGACCUGCCCG--GCGGccgcGGCCa -3'
miRNA:   3'- uCUcCUGGACGGGUauUGCUu---CCGGc -5'
24555 5' -55.8 NC_005264.1 + 94346 0.68 0.843398
Target:  5'- cAGGGGACgCUGCuCCAgaGAUGAacucgcaguccauuAGGCCa -3'
miRNA:   3'- -UCUCCUG-GACG-GGUa-UUGCU--------------UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 95042 0.7 0.718278
Target:  5'- gGGAGGAuuugugaaggcaCCgGCUCGUuGCGggGGUCGg -3'
miRNA:   3'- -UCUCCU------------GGaCGGGUAuUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 95181 0.66 0.915308
Target:  5'- -aAGGugCcGUgCCAUAACGAagacGGGCCGc -3'
miRNA:   3'- ucUCCugGaCG-GGUAUUGCU----UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 95991 0.67 0.883325
Target:  5'- cGAGGGCCucaggauaggcUacaccGCCCAccUGAgGAAGGCCa -3'
miRNA:   3'- uCUCCUGG-----------A-----CGGGU--AUUgCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 100517 0.67 0.860679
Target:  5'- uGAGGACaUGCCUAUGgagacgaACGAGaaacguaaggacGGCCGa -3'
miRNA:   3'- uCUCCUGgACGGGUAU-------UGCUU------------CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 104290 0.66 0.90321
Target:  5'- aGGGGGACgUcGCCCAUGucuuucaugagcGCGAugauGGGCUc -3'
miRNA:   3'- -UCUCCUGgA-CGGGUAU------------UGCU----UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 110537 0.67 0.896811
Target:  5'- --uGGACCUGCCUGauuACGGuggAGGUCGc -3'
miRNA:   3'- ucuCCUGGACGGGUau-UGCU---UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 110620 0.76 0.423171
Target:  5'- cAGAGGuuUUGCCCcgGGCGAccuGGCCGa -3'
miRNA:   3'- -UCUCCugGACGGGuaUUGCUu--CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 111882 0.72 0.627091
Target:  5'- --cGGGCUU-CCCAUGaACGAAGGCCa -3'
miRNA:   3'- ucuCCUGGAcGGGUAU-UGCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 113070 0.75 0.468608
Target:  5'- cGAGG-CCUGCCCu--ACGAAGGUaCGg -3'
miRNA:   3'- uCUCCuGGACGGGuauUGCUUCCG-GC- -5'
24555 5' -55.8 NC_005264.1 + 121423 0.75 0.450124
Target:  5'- aGGAGcccggcgccGGCCUGCCUAggaagaaAGCGGAGGCCGc -3'
miRNA:   3'- -UCUC---------CUGGACGGGUa------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 122315 0.69 0.785399
Target:  5'- aAGGGGGCCgggaaucGCCCG-AACGGGuccucGGCCGc -3'
miRNA:   3'- -UCUCCUGGa------CGGGUaUUGCUU-----CCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.