miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 160630 0.75 0.450124
Target:  5'- aGGAGcccggcgccGGCCUGCCUAggaagaaAGCGGAGGCCGc -3'
miRNA:   3'- -UCUC---------CUGGACGGGUa------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 159737 0.69 0.785399
Target:  5'- aAGGGGGCCgggaaucGCCCG-AACGGGuccucGGCCGc -3'
miRNA:   3'- -UCUCCUGGa------CGGGUaUUGCUU-----CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 159177 0.67 0.861442
Target:  5'- gAGAcGGCC-GCCCAUcgucgaGACGgcGGCCa -3'
miRNA:   3'- -UCUcCUGGaCGGGUA------UUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 157756 0.73 0.576166
Target:  5'- uAGAGGACCccuCCCcgGACGGgcuGGCCGc -3'
miRNA:   3'- -UCUCCUGGac-GGGuaUUGCUu--CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 156542 0.7 0.737961
Target:  5'- cGGGGugCgcgGCCau---CGAGGGCCGg -3'
miRNA:   3'- uCUCCugGa--CGGguauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 156117 0.69 0.790882
Target:  5'- aAGAGuGGCCcGCCCAagguggugggcagGACGAGGGCg- -3'
miRNA:   3'- -UCUC-CUGGaCGGGUa------------UUGCUUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 155164 0.72 0.616868
Target:  5'- cGAcGGACgaGCCCA---UGGAGGCCGa -3'
miRNA:   3'- uCU-CCUGgaCGGGUauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 154719 0.66 0.909377
Target:  5'- cGGGGGcACCUGCgCCGcGGCGuc-GCCGu -3'
miRNA:   3'- -UCUCC-UGGACG-GGUaUUGCuucCGGC- -5'
24555 5' -55.8 NC_005264.1 + 150446 0.67 0.871895
Target:  5'- gGGGGGACacgGCCCAcaucAGCuuucagcucucucugGAGGGCCGc -3'
miRNA:   3'- -UCUCCUGga-CGGGUa---UUG---------------CUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 150169 0.67 0.871895
Target:  5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3'
miRNA:   3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 148614 0.67 0.862202
Target:  5'- -uGGGACCgaaGCUCAUGGCGuuguuuuccgccguGGCCGa -3'
miRNA:   3'- ucUCCUGGa--CGGGUAUUGCuu------------CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 146201 0.66 0.926456
Target:  5'- aAGAGucGCCcgaGCCCAUAACGcgcacgccguaGAGGCCc -3'
miRNA:   3'- -UCUCc-UGGa--CGGGUAUUGC-----------UUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 145016 0.66 0.926456
Target:  5'- uGGAGGAUCUaGCCCccucguCGGAGGaCGc -3'
miRNA:   3'- -UCUCCUGGA-CGGGuauu--GCUUCCgGC- -5'
24555 5' -55.8 NC_005264.1 + 137861 0.67 0.883325
Target:  5'- cGAGGACgUGgCCAcgGAaggcaagcaucUGAGGGCCGc -3'
miRNA:   3'- uCUCCUGgACgGGUa-UU-----------GCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 137453 0.68 0.82093
Target:  5'- cAGGGGAgCUcugGCCCAUGgccaaaugaauaGCGccGGGCCGg -3'
miRNA:   3'- -UCUCCUgGA---CGGGUAU------------UGCu-UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 136080 0.69 0.78448
Target:  5'- cAGAGGguacucgaaguccGCCgggagGCCCAUGcgucugaucaGCGGAGGCaCGg -3'
miRNA:   3'- -UCUCC-------------UGGa----CGGGUAU----------UGCUUCCG-GC- -5'
24555 5' -55.8 NC_005264.1 + 131884 0.67 0.871895
Target:  5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3'
miRNA:   3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 131607 0.67 0.871895
Target:  5'- gGGGGGACacgGCCCAcaucAGCuuucagcucucucugGAGGGCCGc -3'
miRNA:   3'- -UCUCCUGga-CGGGUa---UUG---------------CUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 127334 0.66 0.909377
Target:  5'- cGGGGGcACCUGCgCCGcGGCGuc-GCCGu -3'
miRNA:   3'- -UCUCC-UGGACG-GGUaUUGCuucCGGC- -5'
24555 5' -55.8 NC_005264.1 + 126889 0.72 0.616868
Target:  5'- cGAcGGACgaGCCCA---UGGAGGCCGa -3'
miRNA:   3'- uCU-CCUGgaCGGGUauuGCUUCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.