Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24555 | 5' | -55.8 | NC_005264.1 | + | 11478 | 1.08 | 0.00379 |
Target: 5'- uAGAGGACCUGCCCAUAACGAAGGCCGc -3' miRNA: 3'- -UCUCCUGGACGGGUAUUGCUUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 53513 | 0.68 | 0.812284 |
Target: 5'- gGGAGGuaguGCUUGUCCAUGAugaacgcaaacuCGAAGGCgGu -3' miRNA: 3'- -UCUCC----UGGACGGGUAUU------------GCUUCCGgC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 44089 | 0.68 | 0.837701 |
Target: 5'- -uAGGaACCUGUCCucAACGAuGGCCa -3' miRNA: 3'- ucUCC-UGGACGGGuaUUGCUuCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 145016 | 0.66 | 0.926456 |
Target: 5'- uGGAGGAUCUaGCCCccucguCGGAGGaCGc -3' miRNA: 3'- -UCUCCUGGA-CGGGuauu--GCUUCCgGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 155164 | 0.72 | 0.616868 |
Target: 5'- cGAcGGACgaGCCCA---UGGAGGCCGa -3' miRNA: 3'- uCU-CCUGgaCGGGUauuGCUUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 111882 | 0.72 | 0.627091 |
Target: 5'- --cGGGCUU-CCCAUGaACGAAGGCCa -3' miRNA: 3'- ucuCCUGGAcGGGUAU-UGCUUCCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 69758 | 0.7 | 0.74767 |
Target: 5'- cAGAacuGGcCCUGCCacgaauucgGGCGGAGGCCGc -3' miRNA: 3'- -UCU---CCuGGACGGgua------UUGCUUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 64676 | 0.7 | 0.757277 |
Target: 5'- gGGuuuGGGCCUGCC---GGCGGgcAGGCCGu -3' miRNA: 3'- -UCu--CCUGGACGGguaUUGCU--UCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 91309 | 0.69 | 0.766773 |
Target: 5'- -cAGGGCgaUGCCCGUAcCGGAGGCg- -3' miRNA: 3'- ucUCCUGg-ACGGGUAUuGCUUCCGgc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 17292 | 0.69 | 0.803474 |
Target: 5'- cGGAGGG-CUGCCCAucUAACuGAAuGGUCGc -3' miRNA: 3'- -UCUCCUgGACGGGU--AUUG-CUU-CCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 156117 | 0.69 | 0.790882 |
Target: 5'- aAGAGuGGCCcGCCCAagguggugggcagGACGAGGGCg- -3' miRNA: 3'- -UCUC-CUGGaCGGGUa------------UUGCUUCCGgc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 16442 | 0.69 | 0.766773 |
Target: 5'- -cGGGGCCUGCCCGcgggugugAACGu-GGUCGa -3' miRNA: 3'- ucUCCUGGACGGGUa-------UUGCuuCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 121423 | 0.75 | 0.450124 |
Target: 5'- aGGAGcccggcgccGGCCUGCCUAggaagaaAGCGGAGGCCGc -3' miRNA: 3'- -UCUC---------CUGGACGGGUa------UUGCUUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 88007 | 0.69 | 0.79451 |
Target: 5'- cAGAaGACCUGCCCcUggUGcccacguuccucGGGGCCGa -3' miRNA: 3'- -UCUcCUGGACGGGuAuuGC------------UUCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 27149 | 0.74 | 0.497041 |
Target: 5'- cGAGGGCCgGCCCGUc-CGugcAGGCCGu -3' miRNA: 3'- uCUCCUGGaCGGGUAuuGCu--UCCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 3446 | 0.69 | 0.766773 |
Target: 5'- cAGGGGuCCgccGCCCGUGGCGcccGGuGCCGc -3' miRNA: 3'- -UCUCCuGGa--CGGGUAUUGCu--UC-CGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 16384 | 0.69 | 0.800801 |
Target: 5'- gGGAGGGgaUGCCCGUGGCGcauuggcacucgggGAGGCa- -3' miRNA: 3'- -UCUCCUggACGGGUAUUGC--------------UUCCGgc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 93785 | 0.68 | 0.812284 |
Target: 5'- cGAuGACCUGCCCG--GCGGccgcGGCCa -3' miRNA: 3'- uCUcCUGGACGGGUauUGCUu---CCGGc -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 157756 | 0.73 | 0.576166 |
Target: 5'- uAGAGGACCccuCCCcgGACGGgcuGGCCGc -3' miRNA: 3'- -UCUCCUGGac-GGGuaUUGCUu--CCGGC- -5' |
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24555 | 5' | -55.8 | NC_005264.1 | + | 125511 | 0.7 | 0.737961 |
Target: 5'- cGGGGugCgcgGCCau---CGAGGGCCGg -3' miRNA: 3'- uCUCCugGa--CGGguauuGCUUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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