miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 100517 0.67 0.860679
Target:  5'- uGAGGACaUGCCUAUGgagacgaACGAGaaacguaaggacGGCCGa -3'
miRNA:   3'- uCUCCUGgACGGGUAU-------UGCUU------------CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 148614 0.67 0.862202
Target:  5'- -uGGGACCgaaGCUCAUGGCGuuguuuuccgccguGGCCGa -3'
miRNA:   3'- ucUCCUGGa--CGGGUAUUGCuu------------CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 44089 0.68 0.837701
Target:  5'- -uAGGaACCUGUCCucAACGAuGGCCa -3'
miRNA:   3'- ucUCC-UGGACGGGuaUUGCUuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 17292 0.69 0.803474
Target:  5'- cGGAGGG-CUGCCCAucUAACuGAAuGGUCGc -3'
miRNA:   3'- -UCUCCUgGACGGGU--AUUG-CUU-CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 110537 0.67 0.896811
Target:  5'- --uGGACCUGCCUGauuACGGuggAGGUCGc -3'
miRNA:   3'- ucuCCUGGACGGGUau-UGCU---UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 159177 0.67 0.861442
Target:  5'- gAGAcGGCC-GCCCAUcgucgaGACGgcGGCCa -3'
miRNA:   3'- -UCUcCUGGaCGGGUA------UUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 16384 0.69 0.800801
Target:  5'- gGGAGGGgaUGCCCGUGGCGcauuggcacucgggGAGGCa- -3'
miRNA:   3'- -UCUCCUggACGGGUAUUGC--------------UUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 1722 0.67 0.896811
Target:  5'- cAGGGGGggUGCCCAUAcuaugGCGAuccuGGUCGc -3'
miRNA:   3'- -UCUCCUggACGGGUAU-----UGCUu---CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 88007 0.69 0.79451
Target:  5'- cAGAaGACCUGCCCcUggUGcccacguuccucGGGGCCGa -3'
miRNA:   3'- -UCUcCUGGACGGGuAuuGC------------UUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 150169 0.67 0.871895
Target:  5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3'
miRNA:   3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 55096 0.66 0.909377
Target:  5'- cGGAGGcaacucgcaACUUGCCCAagccACGAGGGuUCGa -3'
miRNA:   3'- -UCUCC---------UGGACGGGUau--UGCUUCC-GGC- -5'
24555 5' -55.8 NC_005264.1 + 85853 0.68 0.851372
Target:  5'- cGGAGGGag-GCCCAUAgaugGCGugcuugugaccaccGAGGCCGu -3'
miRNA:   3'- -UCUCCUggaCGGGUAU----UGC--------------UUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 93785 0.68 0.812284
Target:  5'- cGAuGACCUGCCCG--GCGGccgcGGCCa -3'
miRNA:   3'- uCUcCUGGACGGGUauUGCUu---CCGGc -5'
24555 5' -55.8 NC_005264.1 + 53513 0.68 0.812284
Target:  5'- gGGAGGuaguGCUUGUCCAUGAugaacgcaaacuCGAAGGCgGu -3'
miRNA:   3'- -UCUCC----UGGACGGGUAUU------------GCUUCCGgC- -5'
24555 5' -55.8 NC_005264.1 + 156117 0.69 0.790882
Target:  5'- aAGAGuGGCCcGCCCAagguggugggcagGACGAGGGCg- -3'
miRNA:   3'- -UCUC-CUGGaCGGGUa------------UUGCUUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 10095 0.66 0.925921
Target:  5'- cGGGGGcaucgcgGCCgUGUCCGUGACGugGAGGCa- -3'
miRNA:   3'- -UCUCC-------UGG-ACGGGUAUUGC--UUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 65307 0.67 0.890182
Target:  5'- cGAGGGCUUggcGUCgCGUucacCGGAGGCCGg -3'
miRNA:   3'- uCUCCUGGA---CGG-GUAuu--GCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 87808 0.68 0.829405
Target:  5'- cAGAGGGuuUGCCUcUGGCGc-GGCCa -3'
miRNA:   3'- -UCUCCUggACGGGuAUUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 160630 0.75 0.450124
Target:  5'- aGGAGcccggcgccGGCCUGCCUAggaagaaAGCGGAGGCCGc -3'
miRNA:   3'- -UCUC---------CUGGACGGGUa------UUGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 110620 0.76 0.423171
Target:  5'- cAGAGGuuUUGCCCcgGGCGAccuGGCCGa -3'
miRNA:   3'- -UCUCCugGACGGGuaUUGCUu--CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.