miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24555 5' -55.8 NC_005264.1 + 156542 0.7 0.737961
Target:  5'- cGGGGugCgcgGCCau---CGAGGGCCGg -3'
miRNA:   3'- uCUCCugGa--CGGguauuGCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 94346 0.68 0.843398
Target:  5'- cAGGGGACgCUGCuCCAgaGAUGAacucgcaguccauuAGGCCa -3'
miRNA:   3'- -UCUCCUG-GACG-GGUa-UUGCU--------------UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 18599 0.68 0.837701
Target:  5'- gAGAGGgcgcGCCUGCgCCGgccggAACGguGGUCGu -3'
miRNA:   3'- -UCUCC----UGGACG-GGUa----UUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 87808 0.68 0.829405
Target:  5'- cAGAGGGuuUGCCUcUGGCGc-GGCCa -3'
miRNA:   3'- -UCUCCUggACGGGuAUUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 137453 0.68 0.82093
Target:  5'- cAGGGGAgCUcugGCCCAUGgccaaaugaauaGCGccGGGCCGg -3'
miRNA:   3'- -UCUCCUgGA---CGGGUAU------------UGCu-UCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 125936 0.69 0.790882
Target:  5'- aAGAGuGGCCcGCCCAagguggugggcagGACGAGGGCg- -3'
miRNA:   3'- -UCUC-CUGGaCGGGUa------------UUGCUUCCGgc -5'
24555 5' -55.8 NC_005264.1 + 8912 0.69 0.785399
Target:  5'- cGGGGGGCgaGCCgA-AACGgcGGCCa -3'
miRNA:   3'- -UCUCCUGgaCGGgUaUUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 122315 0.69 0.785399
Target:  5'- aAGGGGGCCgggaaucGCCCG-AACGGGuccucGGCCGc -3'
miRNA:   3'- -UCUCCUGGa------CGGGUaUUGCUU-----CCGGC- -5'
24555 5' -55.8 NC_005264.1 + 136080 0.69 0.78448
Target:  5'- cAGAGGguacucgaaguccGCCgggagGCCCAUGcgucugaucaGCGGAGGCaCGg -3'
miRNA:   3'- -UCUCC-------------UGGa----CGGGUAU----------UGCUUCCG-GC- -5'
24555 5' -55.8 NC_005264.1 + 122876 0.67 0.861442
Target:  5'- gAGAcGGCC-GCCCAUcgucgaGACGgcGGCCa -3'
miRNA:   3'- -UCUcCUGGaCGGGUA------UUGCuuCCGGc -5'
24555 5' -55.8 NC_005264.1 + 150446 0.67 0.871895
Target:  5'- gGGGGGACacgGCCCAcaucAGCuuucagcucucucugGAGGGCCGc -3'
miRNA:   3'- -UCUCCUGga-CGGGUa---UUG---------------CUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 131884 0.67 0.871895
Target:  5'- cGAcGGACCcGUgCgguucuagguuucguGUGACGggGGCCGg -3'
miRNA:   3'- uCU-CCUGGaCGgG---------------UAUUGCuuCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 154719 0.66 0.909377
Target:  5'- cGGGGGcACCUGCgCCGcGGCGuc-GCCGu -3'
miRNA:   3'- -UCUCC-UGGACG-GGUaUUGCuucCGGC- -5'
24555 5' -55.8 NC_005264.1 + 104290 0.66 0.90321
Target:  5'- aGGGGGACgUcGCCCAUGucuuucaugagcGCGAugauGGGCUc -3'
miRNA:   3'- -UCUCCUGgA-CGGGUAU------------UGCU----UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 67211 0.66 0.90321
Target:  5'- cGGGGGCCUGCgCA------AGGCCGc -3'
miRNA:   3'- uCUCCUGGACGgGUauugcuUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 64871 0.66 0.90321
Target:  5'- cGAGcacGGCCUGCCCGc--CGGcAGGCCc -3'
miRNA:   3'- uCUC---CUGGACGGGUauuGCU-UCCGGc -5'
24555 5' -55.8 NC_005264.1 + 60897 0.67 0.896811
Target:  5'- cGAGGccgcggccaacaACCUGCugaCCucuGCGGAGGCCu -3'
miRNA:   3'- uCUCC------------UGGACG---GGuauUGCUUCCGGc -5'
24555 5' -55.8 NC_005264.1 + 65307 0.67 0.890182
Target:  5'- cGAGGGCUUggcGUCgCGUucacCGGAGGCCGg -3'
miRNA:   3'- uCUCCUGGA---CGG-GUAuu--GCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 137861 0.67 0.883325
Target:  5'- cGAGGACgUGgCCAcgGAaggcaagcaucUGAGGGCCGc -3'
miRNA:   3'- uCUCCUGgACgGGUa-UU-----------GCUUCCGGC- -5'
24555 5' -55.8 NC_005264.1 + 95991 0.67 0.883325
Target:  5'- cGAGGGCCucaggauaggcUacaccGCCCAccUGAgGAAGGCCa -3'
miRNA:   3'- uCUCCUGG-----------A-----CGGGU--AUUgCUUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.