miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24557 5' -59.9 NC_005264.1 + 32763 0.66 0.803888
Target:  5'- ---uGGGCG-CGGGuGCGCG-ACGUUg -3'
miRNA:   3'- gacgUCCGCuGCCC-CGCGCuUGCAGg -5'
24557 5' -59.9 NC_005264.1 + 59977 0.66 0.803888
Target:  5'- -aGCcacGCGGCGGuGGcCGCGAGCGagacggCCg -3'
miRNA:   3'- gaCGuc-CGCUGCC-CC-GCGCUUGCa-----GG- -5'
24557 5' -59.9 NC_005264.1 + 66134 0.66 0.795283
Target:  5'- -gGCAuGGCGGCGcgcgaGGGCGCGGcaaaUCCu -3'
miRNA:   3'- gaCGU-CCGCUGC-----CCCGCGCUugc-AGG- -5'
24557 5' -59.9 NC_005264.1 + 8484 0.66 0.786541
Target:  5'- gUGCcGGCGAUGGcaCGCGGAUcUCCc -3'
miRNA:   3'- gACGuCCGCUGCCccGCGCUUGcAGG- -5'
24557 5' -59.9 NC_005264.1 + 158345 0.66 0.786541
Target:  5'- cCUGCgucgGGGCGA-GuGGCGCc-GCGUCCa -3'
miRNA:   3'- -GACG----UCCGCUgCcCCGCGcuUGCAGG- -5'
24557 5' -59.9 NC_005264.1 + 159652 0.66 0.786541
Target:  5'- uCUGgGGGCGGCGaGGGCuucuccggaacGCGGG-GUCg -3'
miRNA:   3'- -GACgUCCGCUGC-CCCG-----------CGCUUgCAGg -5'
24557 5' -59.9 NC_005264.1 + 123708 0.66 0.786541
Target:  5'- cCUGCgucgGGGCGA-GuGGCGCc-GCGUCCa -3'
miRNA:   3'- -GACG----UCCGCUgCcCCGCGcuUGCAGG- -5'
24557 5' -59.9 NC_005264.1 + 71857 0.66 0.786541
Target:  5'- -cGC-GGCGGCGGuguuccgcgacGGCacGCGGGCGcCCg -3'
miRNA:   3'- gaCGuCCGCUGCC-----------CCG--CGCUUGCaGG- -5'
24557 5' -59.9 NC_005264.1 + 122401 0.66 0.786541
Target:  5'- uCUGgGGGCGGCGaGGGCuucuccggaacGCGGG-GUCg -3'
miRNA:   3'- -GACgUCCGCUGC-CCCG-----------CGCUUgCAGg -5'
24557 5' -59.9 NC_005264.1 + 75386 0.66 0.768682
Target:  5'- aUGCAGccGCG-UGGGGCGCGGGa--CCu -3'
miRNA:   3'- gACGUC--CGCuGCCCCGCGCUUgcaGG- -5'
24557 5' -59.9 NC_005264.1 + 98759 0.66 0.768682
Target:  5'- gCUGCGGGCGcCGuucaucuuGcGGCGCacuguucGCGUCCa -3'
miRNA:   3'- -GACGUCCGCuGC--------C-CCGCGcu-----UGCAGG- -5'
24557 5' -59.9 NC_005264.1 + 52197 0.66 0.768682
Target:  5'- gUGCugagggccgugGGGCG-CGGuGGCGCGAGCuGguacgCCu -3'
miRNA:   3'- gACG-----------UCCGCuGCC-CCGCGCUUG-Ca----GG- -5'
24557 5' -59.9 NC_005264.1 + 66750 0.66 0.767777
Target:  5'- -aGCAGGUGGCGGcGGagcuuguggaaauCGCcGACGcCCg -3'
miRNA:   3'- gaCGUCCGCUGCC-CC-------------GCGcUUGCaGG- -5'
24557 5' -59.9 NC_005264.1 + 77800 0.66 0.767777
Target:  5'- -cGCGGcGCaGACGGcauugacGGCGCGGACGa-- -3'
miRNA:   3'- gaCGUC-CG-CUGCC-------CCGCGCUUGCagg -5'
24557 5' -59.9 NC_005264.1 + 81649 0.66 0.759581
Target:  5'- -cGguGGUGAUGGGGC-UGuuCGUCUu -3'
miRNA:   3'- gaCguCCGCUGCCCCGcGCuuGCAGG- -5'
24557 5' -59.9 NC_005264.1 + 17362 0.66 0.758665
Target:  5'- -gGCAGcUGGCGGcGGCGCGGucuguguACGUgCg -3'
miRNA:   3'- gaCGUCcGCUGCC-CCGCGCU-------UGCAgG- -5'
24557 5' -59.9 NC_005264.1 + 28334 0.67 0.750375
Target:  5'- uUGCGgcGGCGuACGGGuaGCGGGCGa-- -3'
miRNA:   3'- gACGU--CCGC-UGCCCcgCGCUUGCagg -5'
24557 5' -59.9 NC_005264.1 + 51608 0.67 0.750375
Target:  5'- -aGgGGGCGACGGcGGCuccccgGCGuACG-CCa -3'
miRNA:   3'- gaCgUCCGCUGCC-CCG------CGCuUGCaGG- -5'
24557 5' -59.9 NC_005264.1 + 119374 0.67 0.750375
Target:  5'- -cGUAGGUGuACGGucGGCGCGcuGCGcgCCg -3'
miRNA:   3'- gaCGUCCGC-UGCC--CCGCGCu-UGCa-GG- -5'
24557 5' -59.9 NC_005264.1 + 141329 0.67 0.750375
Target:  5'- cCUGCGcccacuGCGACGGcGGUGCccACGUCa -3'
miRNA:   3'- -GACGUc-----CGCUGCC-CCGCGcuUGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.