Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24558 | 3' | -56.1 | NC_005264.1 | + | 81278 | 0.66 | 0.929718 |
Target: 5'- gUUCGUGGCAAaccCGGCgcucucGGcAGACCGguUGCc -3' miRNA: 3'- gGAGCGCCGUU---GCCG------UC-UCUGGU--ACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 132178 | 0.66 | 0.929718 |
Target: 5'- uCgUCGuCGGCGGCGGCGcGccGCCcgGUa -3' miRNA: 3'- -GgAGC-GCCGUUGCCGU-CucUGGuaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 13332 | 0.66 | 0.929718 |
Target: 5'- ---aGCGGCGuCGGgaAGAGACCGUa- -3' miRNA: 3'- ggagCGCCGUuGCCg-UCUCUGGUAcg -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 71919 | 0.66 | 0.929718 |
Target: 5'- uCUUCaUGGCGcucuGCaGGCAgGAGAUCGUGCc -3' miRNA: 3'- -GGAGcGCCGU----UG-CCGU-CUCUGGUACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 149874 | 0.66 | 0.929718 |
Target: 5'- uCgUCGuCGGCGGCGGCGcGccGCCcgGUa -3' miRNA: 3'- -GgAGC-GCCGUUGCCGU-CucUGGuaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 149621 | 0.66 | 0.929204 |
Target: 5'- uUCUCGggagaagcagccCGGCGACGGCGGcggcgacGGAuCCGcGCg -3' miRNA: 3'- -GGAGC------------GCCGUUGCCGUC-------UCU-GGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 127136 | 0.66 | 0.929204 |
Target: 5'- gUCUCGCGGCAGCGuuacguccccccaGUacuccggcgAGAGACCuccgacGCc -3' miRNA: 3'- -GGAGCGCCGUUGC-------------CG---------UCUCUGGua----CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 132432 | 0.66 | 0.929204 |
Target: 5'- uUCUCGggagaagcagccCGGCGACGGCGGcggcgacGGAuCCGcGCg -3' miRNA: 3'- -GGAGC------------GCCGUUGCCGUC-------UCU-GGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 20473 | 0.66 | 0.926599 |
Target: 5'- cCCUCGgGGCcgcaAGCGcGCAgacgguccccuccgcGAGGCCGcGCc -3' miRNA: 3'- -GGAGCgCCG----UUGC-CGU---------------CUCUGGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 33532 | 0.66 | 0.924472 |
Target: 5'- -aUUGCGGCGGC-GCAGGGuuuggcggcGCCGgagGCg -3' miRNA: 3'- ggAGCGCCGUUGcCGUCUC---------UGGUa--CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 128930 | 0.66 | 0.924472 |
Target: 5'- cCCUgGCGGCAGaaaGGCGGc-GCUAUcucGCg -3' miRNA: 3'- -GGAgCGCCGUUg--CCGUCucUGGUA---CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 78824 | 0.66 | 0.924472 |
Target: 5'- aCCUCGCGGUAAUGGUcaacuGAaacucuCCGaGCa -3' miRNA: 3'- -GGAGCGCCGUUGCCGu----CUcu----GGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 148252 | 0.66 | 0.924472 |
Target: 5'- gUUCGCGGCGGCguuucacgGGaCAGAuuuGCCcgGCg -3' miRNA: 3'- gGAGCGCCGUUG--------CC-GUCUc--UGGuaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 42012 | 0.66 | 0.924472 |
Target: 5'- gCUCGuCGGCcACGGCGGcAGugUcgacGCg -3' miRNA: 3'- gGAGC-GCCGuUGCCGUC-UCugGua--CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 3393 | 0.66 | 0.924472 |
Target: 5'- cUCUCGCGuaAACuugaGCGGAacGACCAUGg -3' miRNA: 3'- -GGAGCGCcgUUGc---CGUCU--CUGGUACg -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 26040 | 0.66 | 0.924472 |
Target: 5'- gUCUCGCGGUAA--GC-GAGACgcuuCAUGCg -3' miRNA: 3'- -GGAGCGCCGUUgcCGuCUCUG----GUACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 50210 | 0.66 | 0.924472 |
Target: 5'- aCCUCGaGGC-ACGGCAGcauGCCGUuCa -3' miRNA: 3'- -GGAGCgCCGuUGCCGUCuc-UGGUAcG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 153122 | 0.66 | 0.924472 |
Target: 5'- cCCUgGCGGCAGaaaGGCGGc-GCUAUcucGCg -3' miRNA: 3'- -GGAgCGCCGUUg--CCGUCucUGGUA---CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 59993 | 0.66 | 0.924472 |
Target: 5'- cCCUCacgucuacguaCGGCuccGCGGCGGAcacGGCCGUGg -3' miRNA: 3'- -GGAGc----------GCCGu--UGCCGUCU---CUGGUACg -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 64708 | 0.66 | 0.923935 |
Target: 5'- cCCUcCGCGGCGgcGCGGaCAGAacagcgcGGuCCAgGCg -3' miRNA: 3'- -GGA-GCGCCGU--UGCC-GUCU-------CU-GGUaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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