miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24558 3' -56.1 NC_005264.1 + 149874 0.66 0.929718
Target:  5'- uCgUCGuCGGCGGCGGCGcGccGCCcgGUa -3'
miRNA:   3'- -GgAGC-GCCGUUGCCGU-CucUGGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 25740 0.66 0.918993
Target:  5'- --cCGCGGCGuUGGCGGcGACgCggGCg -3'
miRNA:   3'- ggaGCGCCGUuGCCGUCuCUG-GuaCG- -5'
24558 3' -56.1 NC_005264.1 + 6846 0.66 0.918993
Target:  5'- gCUUUGCGGCGugGCGGCGccGGCUAUa- -3'
miRNA:   3'- -GGAGCGCCGU--UGCCGUcuCUGGUAcg -5'
24558 3' -56.1 NC_005264.1 + 22805 0.66 0.913281
Target:  5'- cCCUCG-GGCcaagacuuGGCGGC-GAGG-CGUGCa -3'
miRNA:   3'- -GGAGCgCCG--------UUGCCGuCUCUgGUACG- -5'
24558 3' -56.1 NC_005264.1 + 75932 0.66 0.913281
Target:  5'- gCCUCGCgGGUAACGcaccCAGAcuGGCCuccgGCg -3'
miRNA:   3'- -GGAGCG-CCGUUGCc---GUCU--CUGGua--CG- -5'
24558 3' -56.1 NC_005264.1 + 89973 0.66 0.913281
Target:  5'- gCCg-GCGGUAuGCGGcCAGAGACgugGCg -3'
miRNA:   3'- -GGagCGCCGU-UGCC-GUCUCUGguaCG- -5'
24558 3' -56.1 NC_005264.1 + 92988 0.66 0.911522
Target:  5'- aCUgGCGGCcucguccucuuuagGGgGGuCGGGGACCAgggGCu -3'
miRNA:   3'- gGAgCGCCG--------------UUgCC-GUCUCUGGUa--CG- -5'
24558 3' -56.1 NC_005264.1 + 124735 0.66 0.911522
Target:  5'- ---gGCGGCGACGuucguuacgccuucGCGGAGGCCGa-- -3'
miRNA:   3'- ggagCGCCGUUGC--------------CGUCUCUGGUacg -5'
24558 3' -56.1 NC_005264.1 + 96053 0.66 0.907337
Target:  5'- cCCagGCGGC-ACGGCA-AGACC-UGg -3'
miRNA:   3'- -GGagCGCCGuUGCCGUcUCUGGuACg -5'
24558 3' -56.1 NC_005264.1 + 64708 0.66 0.923935
Target:  5'- cCCUcCGCGGCGgcGCGGaCAGAacagcgcGGuCCAgGCg -3'
miRNA:   3'- -GGA-GCGCCGU--UGCC-GUCU-------CU-GGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 26040 0.66 0.924472
Target:  5'- gUCUCGCGGUAA--GC-GAGACgcuuCAUGCg -3'
miRNA:   3'- -GGAGCGCCGUUgcCGuCUCUG----GUACG- -5'
24558 3' -56.1 NC_005264.1 + 50210 0.66 0.924472
Target:  5'- aCCUCGaGGC-ACGGCAGcauGCCGUuCa -3'
miRNA:   3'- -GGAGCgCCGuUGCCGUCuc-UGGUAcG- -5'
24558 3' -56.1 NC_005264.1 + 132178 0.66 0.929718
Target:  5'- uCgUCGuCGGCGGCGGCGcGccGCCcgGUa -3'
miRNA:   3'- -GgAGC-GCCGUUGCCGU-CucUGGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 13332 0.66 0.929718
Target:  5'- ---aGCGGCGuCGGgaAGAGACCGUa- -3'
miRNA:   3'- ggagCGCCGUuGCCg-UCUCUGGUAcg -5'
24558 3' -56.1 NC_005264.1 + 132432 0.66 0.929204
Target:  5'- uUCUCGggagaagcagccCGGCGACGGCGGcggcgacGGAuCCGcGCg -3'
miRNA:   3'- -GGAGC------------GCCGUUGCCGUC-------UCU-GGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 127136 0.66 0.929204
Target:  5'- gUCUCGCGGCAGCGuuacguccccccaGUacuccggcgAGAGACCuccgacGCc -3'
miRNA:   3'- -GGAGCGCCGUUGC-------------CG---------UCUCUGGua----CG- -5'
24558 3' -56.1 NC_005264.1 + 20473 0.66 0.926599
Target:  5'- cCCUCGgGGCcgcaAGCGcGCAgacgguccccuccgcGAGGCCGcGCc -3'
miRNA:   3'- -GGAGCgCCG----UUGC-CGU---------------CUCUGGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 33532 0.66 0.924472
Target:  5'- -aUUGCGGCGGC-GCAGGGuuuggcggcGCCGgagGCg -3'
miRNA:   3'- ggAGCGCCGUUGcCGUCUC---------UGGUa--CG- -5'
24558 3' -56.1 NC_005264.1 + 59993 0.66 0.924472
Target:  5'- cCCUCacgucuacguaCGGCuccGCGGCGGAcacGGCCGUGg -3'
miRNA:   3'- -GGAGc----------GCCGu--UGCCGUCU---CUGGUACg -5'
24558 3' -56.1 NC_005264.1 + 153122 0.66 0.924472
Target:  5'- cCCUgGCGGCAGaaaGGCGGc-GCUAUcucGCg -3'
miRNA:   3'- -GGAgCGCCGUUg--CCGUCucUGGUA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.